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http://dx.doi.org/10.4014/jmb.1603.03010

Genomic Analysis of the Extremely Halophilic Archaeon Halobacterium noricense CBA1132 Isolated from Solar Salt That Is an Essential Material for Fermented Foods  

Lim, Seul Ki (Microbiology and Functionality Research Group, World Institute of Kimchi)
Kim, Joon Yong (Biological Disaster Analysis Group, Korea Basic Science Institute)
Song, Hye Seon (Biological Disaster Analysis Group, Korea Basic Science Institute)
Kwon, Min-Sung (Microbiology and Functionality Research Group, World Institute of Kimchi)
Lee, Jieun (Microbiology and Functionality Research Group, World Institute of Kimchi)
Oh, Young Jun (Microbiology and Functionality Research Group, World Institute of Kimchi)
Nam, Young-Do (Research Group of Gut Microbiome, Korea Food Research Institute)
Seo, Myung-Ji (Division of Bioengineering, Incheon National University)
Lee, Dong-Gi (Biological Disaster Analysis Group, Korea Basic Science Institute)
Choi, Jong-Soon (Biological Disaster Analysis Group, Korea Basic Science Institute)
Yoon, Changmann (Biological Disaster Analysis Group, Korea Basic Science Institute)
Sohn, Eunju (Biological Disaster Analysis Group, Korea Basic Science Institute)
Rahman, MD. Arif-Ur (Biological Disaster Analysis Group, Korea Basic Science Institute)
Roh, Seong Woon (Biological Disaster Analysis Group, Korea Basic Science Institute)
Choi, Hak-Jong (Microbiology and Functionality Research Group, World Institute of Kimchi)
Publication Information
Journal of Microbiology and Biotechnology / v.26, no.8, 2016 , pp. 1375-1382 More about this Journal
Abstract
The extremely halophilic archaeon Halobacterium noricense is a member of the genus Halobacterium. Strain CBA1132 (= KCCM 43183, JCM 31150) was isolated from solar salt. The genome of strain CBA1132 assembled with 4 contigs, including three rRNA genes, 44 tRNA genes, and 3,208 open reading frames. Strain CBA1132 had nine putative CRISPRs and the genome contained genes encoding metal resistance determinants: copper-translocating P-type ATPase (CtpA), arsenical pump-driving ATPase (ArsA), arsenate reductase (ArsC), and arsenical resistance operon repressor (ArsR). Strain CBA1132 was related to Halobacterium noricense, with 99.2% 16S rRNA gene sequence similarity. Based on the comparative genomic analysis, strain CBA1132 has distinctly evolved; moreover, essential genes related to nitrogen metabolism were only detected in the genome of strain CBA1132 among the reported genomes in the genus Halobacterium. This genome sequence of Halobacterium noricense CBA1132 may be of use in future molecular biological studies.
Keywords
Haloarchaea; extremely halophilic archaea; Halobacterium; genomic analysis;
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