A Color-Reaction-Based Biochip Detection Assay for RIF and INH Resistance of Clinical Mycobacterial Specimens |
Xue, Wenfei
(State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Science, Fudan University)
Peng, Jingfu (State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Science, Fudan University) Yu, Xiaoli (School of Biology and Pharmaceutical Engineering,Wuhan Polytechnic University) Zhang, Shulin (Department of Medical Microbiology and Parasitology, Shanghai Jiao Tong University School of Medicine) Zhou, Boping (The Third People's Hospital of Shenzhen) Jiang, Danqing (State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Science, Fudan University) Chen, Jianbo (The Third People's Hospital of Shenzhen) Ding, Bingbing (School of Biology and Pharmaceutical Engineering,Wuhan Polytechnic University) Zhu, Bin (Baio Technology Limited Company) Li, Yao (State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Science, Fudan University) |
1 | Abebe G, Paasch F, Apers L, Rigouts L, Colebunders R. 2011. Tuberculosis drug resistance testing by molecular methods: opportunities and challenges in resource limited settings. J. Microbiol. Methods 84: 155-160. DOI |
2 | Aziz MA, Wright A, Laszlo A, De Muynck A, Portaels F, Van Deun A, et al. 2006. Epidemiology of antituberculosis drug resistance (the global project on anti-tuberculosis drug resistance surveillance): an updated analysis. Lancet 368: 2142-2154. DOI |
3 | Chen Q, Sun Y, Zhang L, Deng K, Xia H, Xing H, et al. 2011. Detection of C677T mutation of MTHFR in subject with coronary heart disease by hairpin probe with enzymatic color on microarray. Biosens. Bioelectron. 28: 84-90. DOI |
4 | Benson R, Tondella ML, Bhatnagar J, Carvalho Mda G, Sampson JS, Talkington DF, et al. 2008. Development and evaluation of a novel multiplex PCR technology for molecular differential detection of bacterial respiratory disease pathogens. J. Clin. Microbiol. 46: 2074-2077. DOI |
5 | Bobadilla-del-Valle M, Ponce-de-Leon A, Arenas-Huertero C, Vargas-Alarcon G, Kato-Maeda M, Small PM, et al. 2001. rpoB Gene mutations in rifampin-resistant Mycobacterium tuberculosis identified by polymerase chain reaction singlestranded conformational polymorphism. Emerg. Infect. Dis. 7: 1010-1013. DOI |
6 | Caoili JC, Mayorova A, Sikes D, Hickman L, Plikaytis BB, Shinnick TM. 2006. Evaluation of the TB-Biochip oligonucleotide microarray system for rapid detection of rifampin resistance in Mycobacterium tuberculosis. J. Clin. Microbiol. 44: 2378-2381. DOI |
7 | Cherkasova E, Laassri M, Chizhikov V, Korotkova E, Dragunsky E, Agol VI, Chumakov K. 2003. Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses. Proc. Natl. Acad. Sci. USA 100: 9398-9403. DOI |
8 | Cruciani M, Scarparo C, Malena M, Bosco O, Serpelloni G, Mengoli C. 2004. Meta-analysis of BACTEC MGIT 960 and BACTEC 460 TB, with or without solid media, for detection of mycobacteria. J. Clin. Microbiol. 42: 2321-2325. DOI |
9 | Donnabella V, Martiniuk F, Kinney D, Bacerdo M, Bonk S, Hanna B, Rom WN. 1994. Isolation of the gene for the beta subunit of RNA polymerase from rifampicin-resistant Mycobacterium tuberculosis and identification of new mutations. Am. J. Respir. Cell Mol. Biol. 11: 639-643. DOI |
10 | Gryadunov D, Mikhailovich V, Lapa S, Roudinskii N, Donnikov M, Pan'kov S, et al. 2005. Evaluation of hybridisation on oligonucleotide microarrays for analysis of drug-resistant Mycobacterium tuberculosis. Clin. Microbiol. Infect. 11: 531-539. DOI |
11 | Edwards KJ, Metherell LA, Yates M, Saunders NA. 2001. Detection of rpoB mutations in Mycobacterium tuberculosis by biprobe analysis. J. Clin. Microbiol. 39: 3350-3352. DOI |
12 | Espasa M, Gonzalez-Martin J, Alcaide F, Aragon LM, Lonca J, Manterola JM, et al. 2005. Direct detection in clinical samples of multiple gene mutations causing resistance of Mycobacterium tuberculosis to isoniazid and rifampicin using fluorogenic probes. J. Antimicrob. Chemother.55: 860-865. DOI |
13 | Goble M, Iseman MD, Madsen LA, Waite D, Ackerson L, Horsburgh CR Jr. 1993. Treatment of 171 patients with pulmonary tuberculosis resistant to isoniazid and rifampin. N. Engl. J. Med. 328: 527-532. DOI |
14 | Guo Y, Zhou Y, Wang C, Zhu L, Wang S, Li Q, et al. 2009. Rapid, accurate determination of multidrug resistance in M. tuberculosis isolates and sputum using a biochip system. Int. J. Tuberc. Lung Dis. 13: 914-920. |
15 | Han J, Swan DC, Smith SJ, Lum SH, Sefers SE, Unger ER, Tang YW. 2006. Simultaneous amplification and identification of 25 human papillomavirus types with Templex technology. J. Clin. Microbiol. 44: 4157-4162. DOI |
16 | Heep M, Brandstatter B, Rieger U, Lehn N, Richter E Rusch-Gerdes S, Niemann S. 2001. Frequency of rpoB mutations inside and outside the cluster I region in rifampin-resistant clinical Mycobacterium tuberculosis isolates. J. Clin. Microbiol. 39: 107-110. DOI |
17 | Laurenzo D, Mousa SA. 2011. Mechanisms of drug resistance in Mycobacterium tuberculosis and current status of rapid molecular diagnostic testing. Acta Trop. 119: 5-10. DOI |
18 | Hemvani N, Patidar V, Chitnis DS. 2012. A simple and economical in-house phage technique for the rapid detection of rifampin, isoniazid, ethambutol, streptomycin, and ciprofloxacin drug resistance in Mycobacterium tuberculosis, directly on decontaminated sputum samples. Int. J. Infect. Dis. 16: e332-e336. DOI |
19 | Higgs BW, Mohtashemi M, Grinsdale J, Kawamura LM. 2007. Early detection of tuberculosis outbreaks among the San Francisco homeless: trade-offs between spatial resolution and temporal scale. PLoS One 2: e1284. DOI |
20 | Khue PM, Truffot-Pernot C, Texier-Maugein J, Jarlier V, Robert J. 2007. A 10-year prospective surveillance of Mycobacterium tuberculosis drug resistance in France 1995-2004. Eur. Respir. J. 30: 937-944. DOI |
21 | Ling DI, Zwerling AA, Pai M. 2008. GenoType MTBDR assays for the diagnosis of multidrug-resistant tuberculosis: a meta-analysis. Eur. Respir. J. 32: 1165-1174. DOI |
22 | Morgan M, Kalantri S, Flores L, Pai M. 2005. A commercial line probe assay for the rapid detection of rifampicin resistance in Mycobacterium tuberculosis: a systematic review and metaanalysis. BMC Infect. Dis. 5: 62. DOI |
23 | Pang Y, Zhou Y, Zhao B, Liu G, Jiang G, Xia H, et al. 2012. Spoligotyping and drug resistance analysis of Mycobacterium tuberculosis strains from national survey in China. PLoS One 7: e32976. DOI |
24 | Park H, Song EJ, Song ES, Lee EY, Kim CM, Jeong SH, et al. 2006. Comparison of a conventional antimicrobial susceptibility assay to an oligonucleotide chip system for detection of drug resistance in Mycobacterium tuberculosis isolates. J. Clin. Microbiol. 44: 1619-1624. DOI |
25 | Telenti A, Honore N, Bernasconi C, March J, Ortega A, Heym B,et al. 1997. Genotypic assessment of isoniazid and rifampin resistance in Mycobacterium tuberculosis: a blind study at reference laboratory level. J. Clin. Microbiol. 35: 719-723. |
26 | Pholwat S, Ehdaie B, Foongladda S, Kelly K, Houpt E. 2012. Real-time PCR using mycobacteriophage DNA for rapid phenotypic drug susceptibility results forMycobacterium tuberculosis. J. Clin. Microbiol. 50: 754-761. DOI |
27 | Piersimoni C, Olivieri A, Benacchio L, Scarparo C. 2006. Current perspectives on drug susceptibility testing of Mycobacterium tuberculosis complex: the automated nonradiometric systems. J. Clin. Microbiol. 44: 20-28. DOI |
28 | Rondon L, Piuri M, Jacobs WR Jr, de Waard J, Hatfull GF, Takiff HE. 2011. Evaluation of fluoromycobacteriophages for detecting drug resistance in Mycobacterium tuberculosis. J. Clin. Microbiol. 49: 1838-1842. DOI |
29 | Toit K, Mitchell S, Balabanova Y, Evans CA, Kummik T, Nikolayevskyy V, Drobniewski F. 2012. The colour test for drug susceptibility testing of Mycobacterium tuberculosis strains. Int. J. Tuberc. Lung Dis. 16: 1113-1118. DOI |
30 | Varma-Basil M, El-Hajj H, Colangeli R, Hazbon MH, Kumar S, Bose M, et al. 2004. Rapid detection of rifampin resistance in Mycobacterium tuberculosis isolates from India and Mexico by a molecular beacon assay. J. Clin. Microbiol. 42: 5512-5516. DOI |
31 | Williams DL, Spring L, Collins L, Miller LP, Heifets LB, Gangadharam PR, Gillis TP. 1998. Contribution of rpoB mutations to development of rifamycin cross-resistance in Mycobacterium tuberculosis. Antimicrob. Agents Chemother. 42: 1853-1857. |
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