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http://dx.doi.org/10.4014/jmb.1607.07022

Development of a Multiplex PCR for Discrimination of the TLC:RS1:CTX array of Vibrio cholerae Wave 3 El Tor Strains  

Kim, Eun Jin (Department of Pharmacy, College of Pharmacy, Hanyang University)
Yu, Hyun Jin (Department of Pharmacy, College of Pharmacy, Hanyang University)
Nair, G. Balakrish (South East Asia Regional Office, World Health Organization)
Kim, Dong Wook (Department of Pharmacy, College of Pharmacy, Hanyang University)
Publication Information
Journal of Microbiology and Biotechnology / v.26, no.12, 2016 , pp. 2199-2205 More about this Journal
Abstract
Vibrio cholerae O1 serogroup Wave 3 El Tor strains are presently prevalent worldwide. The Wave 3 El Tor strains contain a TLC:RS1:CTX array on chromosome 1, and no element is integrated on chromosome 2. A multiplex PCR optimized to identify the TLC:RS1:CTX array of Wave 3 strains has been developed in this study. By using eight primers, the multiplex PCR can identify the characteristic CTX and RS1 array of Wave 3 strains from various arrays of strains belonging to other Waves. The four amplified DNA fragments of Wave 3 strains have been cloned in a vector, which could be used as a positive control for the multiplex PCR. This multiplex PCR and the positive control set could be useful tools for rapid recognition of Wave 3 El Tor strains.
Keywords
V. cholerae; multiplex PCR;
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1 Basu A, Mukhopadhyay AK, Garg P, Chakraborty S, Ramamurthy T, Yamasaki S, et al. 2000. Diversity in the arrangement of the CTX prophages in classical strains of Vibrio cholerae O1. FEMS Microbiol. Lett. 182: 35-40.   DOI
2 Dolores J, Satchell KJ. 2013. Analysis of Vibrio cholerae genome sequences reveals unique rtxA variants in environmental strains and an rtxA-null mutation in recent altered El Tor isolates. mBio 4: e00624.
3 Faruque SM, Asadulghani, Kamruzzaman M, Nandi RK, Ghosh AN, Nair GB, et al. 2002. RS1 element of Vibrio cholerae can propagate horizontally as a filamentous phage exploiting the morphogenesis genes of CTX$\Phi$. Infect. Immun. 70: 163-170.   DOI
4 Ghosh P, Naha A, Basak S, Ghosh S, Ramamurthy T, Koley H, et al. 2014. Haitian variant tcpA in Vibrio cholerae O1 El Tor strains in Kolkata, India. J. Clin. Microbiol. 52: 1020-1021.   DOI
5 Choi SY, Lee JH, Kim EJ, Lee HR, Jeon YS, von Seidlein L, et al. 2010. Classical RS1 and environmental RS1 elements in Vibrio cholerae O1 El Tor strains harbouring a tandem repeat of CTX prophage: revisiting Mozambique in 2005. J. Med. Microbiol. 59: 302-308.   DOI
6 Bhuiyan NA, Nusrin S, Ansaruzzaman M, Islam A, Sultana M, Alam M, et al. 2012. Genetic characterization of Vibrio cholerae O1 strains isolated in Zambia during 1996-2004 possessing the unique VSP-II region of El Tor variant. Epidemiol. Infect. 140: 510-518.   DOI
7 Ghosh R, Nair GB, Tang L, Morris JG, Sharma NC, Ballal M, et al. 2008. Epidemiological study of Vibrio cholerae using variable number of tandem repeats. FEMS Microbiol. Lett. 288: 196-201.   DOI
8 Kaper JB, Morris JG Jr, Levine MM. 1995. Cholera. Clin. Microbiol. Rev. 8: 48-86.
9 Kim EJ, Lee CH, Nair GB, Kim DW. 2015. Whole-genome sequence comparisons reveal the evolution of Vibrio cholerae O1. Trends Microbiol. 23: 479-489.   DOI
10 Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, et al. 2011. The origin of the Haitian cholera outbreak strain. N. Engl. J. Med. 364: 33-42.   DOI
11 Raychoudhuri A, Mukhopadhyay AK, Ramamurthy T, Nandy RK, Takeda Y, Nair GB. 2008. Biotyping of Vibrio cholerae O1: time to redefine the scheme. Indian J. Med. Res. 128: 695-698.
12 Kim EJ, Lee D, Moon SH, Lee CH, Kim SJ, Lee JH, et al. 2014. Molecular insights into the evolutionary pathway of Vibrio cholerae O1 atypical El Tor variants. PLoS Pathog. 10: e1004384.   DOI
13 Lee JH, Choi SY, Jeon YS, Lee HR, Kim EJ, Nguyen BM, et al. 2009. Classification of hybrid and altered Vibrio cholerae strains by CTX prophage and RS1 element structure. J. Microbiol. 47: 783-788.   DOI
14 Morita M, Ohnishi M, Arakawa E, Bhuiyan NA, Nusrin S, Alam M, et al. 2008. Development and validation of a mismatch amplification mutation PCR assay to monitor the dissemination of an emerging variant of Vibrio cholerae O1 biotype El Tor. Microbiol. Immunol. 52: 314-317.   DOI
15 Li B, Chen R, Wang D, Tan H, Ke B, He D, et al. 2016. Distribution and molecular characteristics of Vibrio cholerae O1 El Tor isolates recovered in Guangdong Province, China, 1961-2013. Infect. Genet. Evol. 37: 70-76.   DOI
16 Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, et al. 2011. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477: 462-465.   DOI
17 Devault AM, Golding GB, Waglechner N, Enk JM, Kuch M, Tien JH, et al. 2014. Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849. N. Engl. J. Med. 370: 334-340.   DOI
18 Naha A, Chowdhury G, Ghosh-Banerjee J, Senoh M, Takahashi T, Ley B, et al. 2013. Molecular characterization of high-level-cholera-toxin-producing El Tor variant Vibrio cholerae strains in the Zanzibar Archipelago of Tanzania. J. Clin. Microbiol. 51: 1040-1045.   DOI
19 Naha A, Pazhani GP, Ganguly M, Ghosh S, Ramamurthy T, Nandy RK, et al. 2012. Development and evaluation of a PCR assay for tracking the emergence and dissemination of Haitian variant ctxB in Vibrio cholerae O1 strains isolated from Kolkata, India. J. Clin. Microbiol. 50: 1733-1736.   DOI
20 Nguyen BM, Lee JH, Cuong NT, Choi SY, Hien NT, Anh DD, et al. 2009. Cholera outbreaks caused by an altered Vibrio cholerae O1 El Tor biotype strain producing classical cholera toxin B in Vietnam in 2007 to 2008. J. Clin. Microbiol. 47: 1568-1571.   DOI
21 Zhou H, Cui Z, Diao B, Zhang C, Pang B, Zhang L, Kan B. 2013. A three-loci variable number of tandem repeats analysis for molecular subtyping of Vibrio cholerae O1 and O139. Foodborne Pathog. Dis. 10: 723-730.   DOI
22 Okada K, Roobthaisong A, Nakagawa I, Hamada S, Chantaroj S. 2012. Genotypic and PFGE/MLVA analyses of Vibrio cholerae O1: geographical spread and temporal changes during the 2007-2010 cholera outbreaks in Thailand. PLoS One 7: e30863.   DOI
23 Raychoudhuri A, Mukherjee P, Ramamurthy T, Nandy RK, Takeda Y, Nair GB, Mukhopadhyay AK. 2010. Genetic analysis of CTX prophages with special reference to ctxB and rstR alleles of Vibrio cholerae O139 strains isolated from Kolkata over a decade. FEMS Microbiol. Lett. 303: 107-115.   DOI
24 Safa A, Nair GB, Kong RY. 2010. Evolution of new variants of Vibrio cholerae O1. Trends Microbiol. 18: 46-54.   DOI
25 Shakya G, Kim DW, Clemens JD, Malla S, Upadhyaya BP, Dumre SP, et al. 2012. Phenotypic and genetic characterization of Vibrio cholerae O1 clinical isolates collected through national antimicrobial resistance surveillance network in Nepal. World J. Microbiol. Biotechnol. 28: 2671-2678.   DOI
26 Spagnoletti M, Ceccarelli D, Colombo MM. 2012. Rapid detection by multiplex PCR of genomic islands, prophages and integrative conjugative elements in V. cholerae 7th pandemic variants. J. Microbiol. Methods 88: 98-102.   DOI