Characterization of an Alkaline Family I.4 Lipase from Bacillus sp. W130-35 Isolated from a Tidal Mud Flat with Broad Substrate Specificity |
Kim, Hee Jung
(Department of Pharmacy, Sunchon National University)
Jung, Won Kyeong (Research Institute of Life Pharmaceutical Sciences, Sunchon National University) Lee, Hyun Woo (Department of Pharmacy, Sunchon National University) Yoo, Wanki (Department of Chemistry, Sookmyung Women's University) Kim, T. Doohun (Department of Chemistry, Sookmyung Women's University) Kim, Hoon (Department of Pharmacy, Sunchon National University) |
1 | Ruiz C, Javier Pastor FI, Diaz P. 2003. Isolation and characterization of Bacillus sp. BP-6 LipA, a ubiquitous lipase among mesophilic Bacillus species. Lett. Appl. Microbiol. 37: 354-359. DOI |
2 | Ruiz C, Blanco A, Pastor FI, Diaz P. 2002. Analysis of Bacillus megaterium lipolytic system and cloning of LipA, a novel subfamily I.4 bacterial lipase. FEMS Microbiol. Lett. 217: 263-267. DOI |
3 | Rasool S, Johri S, Riyaz-ul-Hassan S, Maqbool QU, Verma V, Koul S, et al. 2005. Molecular cloning of enantioselective ester hydrolase from Bacillus pumilus DBRL-191. FEMS Microbiol. Lett. 249: 113-120. DOI |
4 | van Pouderoyen G, Eggert T, Jaeger KE, Dijkstra BW. 2001. The crystal structure of Bacillus subtilis lipase: a minimal alpha/beta hydrolase fold enzyme. J. Mol. Biol. 309: 215-226. DOI |
5 | Petersen TN, Brunak S, von Heijne G, Nielsen H. 2011. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8: 785-786. DOI |
6 | Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, et al. 1992. The alpha/beta hydrolase fold. Protein Eng. 5: 197-211. DOI |
7 | Wi AR, Jeon SJ, Kim S, Park HJ, Kim D, Han SJ, Yim JH, Kim HW. 2014. Characterization and a point mutational approach of a psychrophilic lipase from an arctic bacterium, Bacillus pumilus. Biotechnol. Lett. 36: 1295-1302. DOI |
8 | Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. DOI |
9 | Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30: 2725-2759. DOI |
10 | Sulong MR, Abdul Rahman RN, Salleh AB, Basri M. 2006. A novel organic solvent tolerant lipase from Bacillus sphaericus 205y: extracellular expression of a novel OST-lipase gene. Protein Expr. Purif. 49: 190-195. DOI |
11 | Simons JW, van Kampen MD, Ubarretxena-Belandia I, Cox RC, Alves dos Santos CM, Egmond MR, Verheij HM. 1999. Identification of a calcium binding site in Staphylococcus hyicus lipase: generation of calcium-independent variants. Biochemistry 38: 2-10. DOI |
12 | Kim HJ, Jeong YS, Jung WK, Kim SK, Lee HW, Kahng HY, et al. 2015. Characterization of novel family IV esterase and family I.3 lipase from an oil-polluted mud flat metagenome. Mol. Biotechnol. 57: 781-792. DOI |
13 | Arpigny JL, Jaeger KE. 1999. Bacterial lipolytic enzymes: classification and properties. Biochem. J. 343: 177-183. DOI |
14 | Akbulut N, Öztürk MT, Pijning T, Öztürk SI, Gümüel F. 2013. Improved activity and thermostability of Bacillus pumilus lipase by directed evolution. J. Biotechnol. 164: 123-129. DOI |
15 | Kim HK, Choi HJ, Kim MH, Sohn CB, Oh TK. 2002. Expression and characterization of Ca2+-independent lipase from Bacillus pumilus B26. Biochim. Biophys. Acta 1583: 205-212. DOI |
16 | Dartois V, Baulard A, Schanck K, Colson C. 1992. Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim. Biophys. Acta 1131: 253-260. DOI |
17 | Kamijo T, Saito A, Ema S, Yoh I, Hayashi H, Nagata R, et al. 2011. Molecular and enzymatic characterization of a subfamily I.4 lipase from an edible oil-degrader Bacillus sp. HH-01. Antonie Van Leeuwenhoek 99: 179-187. DOI |
18 | de Jong A, van Heel AJ, Montalban-Lopez M, Krawczyk AO, Berendsen EM, Wells-Bennik M, Kuipers OP. 2015. Draft genome sequences of five spore-forming food isolates of Bacillus pumilus. Genome Announc. 3: e01539-14. DOI |
19 | Jaeger KE, Eggert T. 2002. Lipases for biotechnology. Curr. Opin. Biotechnol. 13: 390-397. DOI |
20 | Charbonneau DM, Beauregard M. 2013. Role of key salt bridges in thermostability of G. thermodenitrificans EstGtA2: distinctive patterns within the new bacterial lipolytic enzyme family XV. PLoS One 8: e76675. DOI |
21 | Bae SY, Ryu BH, Jang E, Kim S, Kim TD. 2013. Characterization and immobilization of a novel SGNH hydrolase (Est24) from Sinorhizobium meliloti. Appl. Microbiol. Biotechnol. 97: 1637-1647. DOI |
22 | Nthangeni MB, Patterton H, van Tonder A, Vergeer WP, Litthauer D. 2001. Over-expression and properties of a purified recombinant Bacillus licheniformis lipase: a comparative report on Bacillus lipases. Enzyme Microb. Technol. 28: 705-712. DOI |
23 | Nicholas KB, Nicholas Jr HB. 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Distributed by the authors. |
24 | Lowry OH, Rosenbrough NJ, Farr AL, Randall RJ. 1951. Protein measurement with the folin phenol reagent. J. Biol. Chem. 193: 265-275. |
25 | Kim YH, Kwon EJ, Kim SK, Jeong YS, Kim J, Yun HD, Kim H. 2010. Molecular cloning and characterization of a novel family VIII alkaline esterase from a compost metagenomic library. Biochem. Biophys. Res. Commun. 393: 45-49. DOI |
26 | Lesuisse E, Schanck K, Colson C. 1993. Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme. Eur. J. Biochem. 216: 155-160. DOI |
27 | Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685. DOI |
28 | Laborda PR, Fonseca FS, Angolini CF, Oliveira VM, Souza AP, Marsaioli AJ. 2014. Genome sequence of Bacillus safensis CFA06, isolated from biodegraded petroleum in Brazil. Genome Announc. 2: e00642-14. DOI |
29 | Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, et al. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62: 716-721. DOI |
30 | Kim J, Hong SK. 2012. Isolation and characterization of an agarase-producing bacterial strain, Alteromonassp. GNUM-1, from the West Sea, Korea. J. Microbiol. Biotechnol. 22: 1621-1628. DOI |
31 | Shin ES, Yang MJ, Jung KH, Kwon EJ, Jung JS, Park SK, et al. 2002. Influence of the transposition of the thermostabilizing domain of Clostridium thermocellum xylanase (XynX) on xylan binding and thermostabilization. Appl. Environ. Microbiol. 68: 3496-3501. DOI |
32 | Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. |