Impact of Diet in Shaping Gut Microbiota Revealed by a Comparative Study in Infants During the First Six Months of Life |
Fan, Wenguang
(Key Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural University)
Huo, Guicheng (Key Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural University) Li, Xiaomin (Key Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural University) Yang, Lijie (Key Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural University) Duan, Cuicui (Key Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural University) |
1 | M artín R, Langa S, Reviriego C, Jiminez E, Marín ML, Xaus J, et al. 2003. Human milk i s a source of lactic acid bacteria for the infant gut. J. Pediatr. 143: 754-758. DOI ScienceOn |
2 | M artín R, Heilig GHJ, Zoetendal EG, Smidt H, Rodriguez JM. 2007. Diversity of the Lactobacillus group in breast milk and vagina of healthy women and potential role in the colonization of the infant gut. J. Appl. Microbiol. 103: 2638- 2644. DOI ScienceOn |
3 | Mo ore TA, Hanson CK, Anderson-Berry A. 2011. Colonization of the gastrointestinal tract in neonates: a review. ICAN 3: 291-295. DOI |
4 | Mo relli L. 2008. Postnatal development of intestinal microflora as influenced by infant nutrition. J. Nutr. 138: 1791S-1795S. DOI |
5 | Neu J, Rushing J. 2011. Cesarean versus vaginal delivery: long-term infant outcomes and the hygiene hypothesis. Clin. Perinatol. 38: 321-331. DOI ScienceOn |
6 | P almer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. 2007. Development of the human infant intestinal microbiota. PLoS Biol. 5: e177. DOI |
7 | Par sonnet J, Friedman GD, Vandersteen DP, Chang Y, Vogelman JH, Orentreich N, Sibley RK. 1991. Helicobacter pylori infection and the risk of gastric carcinoma. N Engl. J. Med. 325: 1127-1131. DOI ScienceOn |
8 | Pe nders J, Vink C, Driessen C, London N, Thijs C, Stobberingh EE. 2005. Quantification of Bifidobacterium spp. , Escherichia and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. FEMS Microbiol. Lett. 243: 141-147. DOI ScienceOn |
9 | Q in J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. 2010. A h uman g ut microbial g ene catalogue established by metagenomic sequencing. Nature 464: 59-65. DOI ScienceOn |
10 | R eetta MS, Elaine EV, Christine FF, Joel Dore CE, de VOS VM. 2002. Diversity of Bidobacterium and Lactobacillus spp. In breast-fed and formula-fed infants as assessed by 16S rDNA sequence differences. Microb. Ecol. Health Dis. 14: 97-105. DOI |
11 | F ernandez L, Langa S, Martin V, Maldonado A, Jimenez E, Martin R, Rodriguez JM. 2013. The human milk microbiota: origin and p otential roles in health and disease. Pharmacol. Res. 69: 1-10. DOI ScienceOn |
12 | Fox PF, Kelly AL. 2006. Indigenous enzymes in milk: overview and historical aspects-Part - 2 . Int. Dairy J. 16: 517-532. DOI ScienceOn |
13 | G onzález R, Klaassens ES, Malinen E, de Vos WM, Vaughan EE. 2008. Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide. Appl. Environ. Microbiol. 74: 4686-4694. DOI ScienceOn |
14 | Ha raszthy VI, Zambon JJ, Sreenivasan PK, Zambon MM, Gerber D, Rego R, Parker C. 2007. Identification of oral bacterial species associated with halitosis. J. Am. Dent. Assoc. 138: 1113-1120. DOI ScienceOn |
15 | Ka ssinen A, Krogius-Kurikka L, Makivuokko H, Rinttila T, Paulin L, Corander J, et al. 2007. The fecal microbiota of irritable bowel sydrome patients differs significantly from that of healthy subjects. Gastroenterology 133: 24-33. DOI ScienceOn |
16 | Klaassens ES, de Vos WM, Vaughan EE. 2007. Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl. Environ. Microbiol. 73: 1388-1392. DOI ScienceOn |
17 | Koen ig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, et al. 2011. Microbes and health sackler colloquium: succession of microbial consortia in the developing infant gut microbiome. Proc. Natl. Acad. Sci. USA 108: 4578-4585. DOI ScienceOn |
18 | Lecuit M, Suarez F, Lortholary O. 2004. Immunoproliferative small intestinal disease associated with Campylobacter jejuni. Med. Sci. 20: 638-640. |
19 | B ezirtzoglou E, Tsiotsias A, Welling GW. 2011. Microbiota profile in feces of breast-and formula-fed newborns by using fluorescence in situ hybridization (FISH). Anaerobe 17: 478-482. DOI ScienceOn |
20 | B iasucci G, Benenati B, Morelli L, Bessi E, Boehm G. 2008. Cesarean delivery may affect the early biodiversity of intestinal bacteria. J. Nutr. 138: 1796S-1800S. DOI |
21 | B iasucci G, Rubini M, Riboni S, Morelli L, Bessi E, Retetangos C. 2010. Mode of delivery affects the bacterial community in the newborn gut. Early Hum. Dev. 86: S13- S15. |
22 | Cl aesson MJ, Cusack S, O'Sullivan O, Greene-Diniz R, de Weerd H, Flannery E, et al. 2011. Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc. Natl. Acad. Sci. USA 108: 4586-4591. DOI ScienceOn |
23 | D e Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, et al. 2011. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. USA 107: 14691-14696. |
24 | d e la Cochetiere MF, Piloquet H, des Robert C, Darmaun D, Galmiche JP, Roze JC. 2004. Early intestinal bacterial colonization and necrotizing enterocolitis in infants: the putative role of Clostridium. Pediatr. Res. 56: 366-370. DOI ScienceOn |
25 | D elzenne NM, Neyrinck AM, Bäckhed F, Cani PD. 2011. Targeting gut microbiota in obesity: effects of prebiotics and probiotics. Nat. Rev. Endocrinol. 7: 639-646. DOI ScienceOn |
26 | E ckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, et al. 2005. Diversity of the human intestinal microbial flora. Science 308: 1635-1638. DOI ScienceOn |
27 | Fabrice A, Didier R. 2009. Exploring microbial diversity using 16S rRNA high-throughput methods. J. Comput. Sci. Syst. Biol. 2: 074-092. DOI |
28 | Allen J, Hector D. 2005. Benefits of breastfeeding. NSW Public Health Bull. 16: 42-46. DOI |
29 | B äckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. 2005. Host-bacterial mutualism in the human intestine. Science 307: 1915-1920. DOI ScienceOn |
30 | Berseth CL, Thureen PJ, Hay WW. 2006. Development of the gastrointestinal tract. Neonatal Nutr. Metab. 2: 67-73. |
31 | Young VB. 2012. The intestinal microbiota in health and disease. Curr. Opin. Gastroenterol. 28: 63-69. DOI ScienceOn |
32 | R inne M, Kalliomaki M, Arvilommi H, Salminen S, Isolauri E. 2005. Effect of probiotics and breastfeeding on the Bifidobacterium and Lactobacillus/Enterococcus microbiota and humoral immune responses. J. Pediatr. 147: 186-191. DOI ScienceOn |
33 | Sc hloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. 2009. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75: 7537-7541. DOI ScienceOn |
34 | Sinkiewicz G, Ljunggren L. 2008. Occurrence of Lactobacillus reuteri in human breast milk. Microb. Ecol. Health Dis. 20: 122-126. DOI ScienceOn |
35 | Ta mboli CP, Neut C, Desreumaux P, Colombel JF. 2004. Dysbiosis in inflammatory bowel disease. Gut 53: 1-4. DOI ScienceOn |
36 | T urnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. 2006. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027- 1031. DOI ScienceOn |
37 | Tur roni F, Foroni E, Pizzetti P, Giubellini V, Ribbera A, Merusi P, et al. 2009. Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl. Environ. Microbiol. 75: 1534-1545. DOI ScienceOn |
38 | Wa ar K, Degener JE, van Luyn MJ, Harmsen HJ. 2005. Fluorescence in situ hybridization with specific DNA probes offers adequate detection of Enterococcus faecalis and Enterococcus faecium in clinical samples. J. Med. Microbiol. 54: 937-944. DOI ScienceOn |
39 | Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73: 5261-5267. DOI ScienceOn |
40 | S okol H, Pigneur B, Watterlot L, Lakhdari O, Bermudez- Humaran LG, Gratadoux JJ, et al. 2008. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. USA 105: 16731-16736. DOI ScienceOn |
41 | F allani M, Young D, Scott J , Norin E, Amarri S, Adam R, et al. 2010. Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breastfeeding, and antibiotics. J. Pediatr. Gastroenterol. Nutr. 51: 77-84. DOI ScienceOn |
42 | Chao A, Shen TJ. 2003. Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environ. Ecol. Stat. 10: 429-443. DOI |