Phylogenetic Diversity of Dominant Bacterial and Archaeal Communities in Plant-Microbial Fuel Cells Using Rice Plants |
Ahn, Jae-Hyung
(Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration)
Jeong, Woo-Suk (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Choi, Min-Young (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Kim, Byung-Yong (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Song, Jaekyeong (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Weon, Hang-Yeon (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) |
1 | Ahn JH, Choi MY, Kim BY, Lee JS, Song J, Kim GY, Weon HY. 2014. Effects of water-saving irrigation on emissions of greenhouse gases and prokaryotic communities in rice paddy soil. Microb. Ecol. 68: 271-283. DOI ScienceOn |
2 | Aklujkar M, Young N, Holmes D, Chavan M, Risso C, Kiss H, et al. 2010. The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments. BMC Genomics. 11: 490. DOI ScienceOn |
3 | Arends JA, Blondeel E, Tennison S, Boon N, Verstraete W. 2012. Suitability of granular carbon as an anode material for sediment microbial fuel cells. J. Soils Sediments 12: 1197-1206. DOI |
4 | Hallberg K, Hedrich S, Johnson DB. 2011. Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermotolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae. Extremophiles 15: 271-279. DOI |
5 | He Z, Angenent LT. 2006. Application of bacterial biocathodes in microbial fuel cells. Electroanalysis 18: 2009-2015. DOI ScienceOn |
6 | Helder M, Strik D, Hamelers H, Buisman C. 2012. The flatplate plant-microbial fuel cell: the effect of a new design on internal resistances. Biotechnol. Biofuels 5: 1-11. DOI ScienceOn |
7 | Holmes DE, Bond DR, Lovley DR. 2004. Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes. Appl. Environ. Microbiol. 70: 1234-1237. DOI ScienceOn |
8 | Holmes DE, O'Neil RA, Vrionis HA, N'Guessan LA, Ortiz- Bernad I, Larrahondo MJ, et al. 2007. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)- reducing subsurface environments. ISME J. 1: 663-677. DOI ScienceOn |
9 | Hong SW, Chang IS, Choi YS, Chung TH. 2009. Experimental evaluation of influential factors for electricity harvesting from sediment using microbial fuel cell. Bioresour. Technol. 100: 3029-3035. DOI ScienceOn |
10 | Hur M, Kim Y, Song HR, Kim JM, Choi YI, Yi H. 2011. Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings. Appl. Environ. Microbiol. 77: 7611-7619. DOI ScienceOn |
11 | Ishii Si, Hotta Y, Watanabe K. 2008. Methanogenesis versus electrogenesis: morphological and phylogenetic comparisons of microbial communities. Biosci. Biotechnol. Biochem. 72: 286-294. DOI ScienceOn |
12 | Strik DPBTB, Picot M, Buisman CJN, Barriere F. 2013. pH and temperature determine performance of oxygen reducing biocathodes. Electroanalysis 25: 652-655. DOI ScienceOn |
13 | Shehab N, Li D, Amy G, Logan B, Saikaly P. 2013. Characterization of bacterial and archaeal communities in air-cathode microbial fuel cells, open circuit and sealed-off reactors. Appl. Microbiol. Biotechnol. 97: 9885-9895. DOI ScienceOn |
14 | Slobodkina GB, Reysenbach A-L, Panteleeva AN, Kostrikina NA, Wagner ID, Bonch-Osmolovskaya EA, Slobodkin AI. 2012. Deferrisoma camini gen. nov., sp. nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria. Int. J. Syst. Evol. Microbiol. 62: 2463-2468. DOI ScienceOn |
15 | Strik DPBTB, Hamelers HVM, Snel JFH, Buisman CJN. 2008. Green electricity production with living plants and bacteria in a fuel cell. Int. J. Energ. Res. 32: 870-876. DOI ScienceOn |
16 | Strik DPBTB, Timmers RA, Helder M, Steinbusch KJJ, Hamelers HVM, Buisman CJN. 2011. Microbial solar cells: applying photosynthetic and electrochemically active organisms. Trends Biotechnol. 29: 41-49. DOI ScienceOn |
17 | Timmers RA, Strik DPBTB, Hamelers HVM, Buisman CJN. 2013. Electricity generation by a novel design tubular plant microbial fuel cell. Biomass Bioenergy 51: 60-67. DOI ScienceOn |
18 | Torres CI, Kato Marcus A, Rittmann BE. 2008. Proton transport inside the biofilm limits electrical current generation by anode-respiring bacteria. Biotechnol. Bioeng. 100: 872-881. DOI ScienceOn |
19 | Bond DR, Holmes DE, Tender LM, Lovley DR. 2002. Electrode-reducing microorganisms that harvest energy from marine sediments. Science 295: 483-485. DOI ScienceOn |
20 | Bombelli P, Iyer D, Covshoff S, McCormick A, Yunus K, Hibberd J, et al. 2013. Comparison of power output by rice (Oryza sativa) and an associated weed (Echinochloa glabrescens) in vascular plant bio-photovoltaic (VP-BPV) systems. Appl. Microbiol. Biotechnol. 97: 429-438. DOI ScienceOn |
21 | Carbajosa S, Malki M, Caillard R, Lopez MF, Palomares FJ, Martín-Gago JA, et al. 2010. Electrochemical growth of Acidithiobacillus ferrooxidans on a graphite electrode for obtaining a biocathode for direct electrocatalytic reduction of oxygen. Biosens. Bioelectron. 26: 877-880. DOI ScienceOn |
22 | Chiranjeevi P, Chandra R, Mohan SV. 2013. Ecologically engineered submerged and emergent macrophyte based system: an integrated eco-electrogenic design for harnessing power with simultaneous wastewater treatment. Ecol. Eng. 51: 181-190. DOI ScienceOn |
23 |
Chiranjeevi P, Mohanakrishna G, Venkata Mohan S. 2012. Rhizosphere mediated electrogenesis with the function of anode placement for harnessing bioenergy through |
24 | Chun J, Kim K, Lee JH, Choi Y. 2010. The analysis of oral microbial communities of wild-type and Toll-like receptor 2- deficient mice using a 454 GS FLX titanium pyrosequencer. BMC Microbiol. 10: 101. DOI ScienceOn |
25 | Conrad R. 2007. Microbial ecology of methanogens and methanotrophs. Adv. Agron. 96: 1-63. DOI |
26 | Kiely PD, Regan JM, Logan BE. 2011. The electric picnic: synergistic requirements for exoelectrogenic microbial communities. Curr. Opin. Biotechnol. 22: 378-385. DOI ScienceOn |
27 | Kaku N, Yonezawa N, Kodama Y, Watanabe K. 2008. Plant/ microbe cooperation for electricity generation in a rice paddy field. Appl. Microbiol. Biotechnol. 79: 43-49. DOI |
28 | Kato S, Hashimoto K, Watanabe K. 2012. Microbial interspecies electron transfer via electric currents through conductive minerals. Proc. Natl. Acad. Sci. USA 109: 10042-10046. DOI |
29 | Kendall MM, Wardlaw GD, Tang CF, Bonin AS, Liu Y, Valentine DL. 2007. Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov. Appl. Environ. Microbiol. 73: 407-414. DOI ScienceOn |
30 | Kodama Y, Watanabe K. 2011. Rhizomicrobium electricum sp. nov., a facultatively anaerobic, fermentative, prosthecate bacterium isolated from a cellulose-fed microbial fuel cell. Int. J. Syst. Evol. Microbiol. 61: 1781-1785. DOI ScienceOn |
31 | Kuever J, Rainey FA, Widdel F. 2005. Family II. Desulfobulbaceae fam. nov., pp. 988-999. In Brenner DJ, Krieg NR, Garrity GM, Staley JT, Boone DR, Vos P, et al. (eds.). Bergey's Manual of Systematic Bacteriology. Springer, New York. |
32 | Liu H, Cheng S, Logan BE. 2005. Power generation in fedbatch microbial fuel cells as a function of ionic strength, temperature, and reactor configuration. Environ. Sci. Technol. 39: 5488-5493. DOI ScienceOn |
33 | Liu S, Song H, Li X, Yang F. 2013. Power generation enhancement by utilizing plant photosynthate in microbial fuel cell coupled constructed wetland system. Int. J. Photoenergy 2013: 10. |
34 | Deng H, Chen Z, Zhao F. 2012. Energy from plants and microorganisms: progress in plant-microbial fuel cells. ChemSusChem. 5: 1006-1011. DOI ScienceOn |
35 | Xia X, Sun Y, Liang P, Huang X. 2012. Long-term effect of set potential on biocathodes in microbial fuel cells: electrochemical and phylogenetic characterization. Bioresour. Technol. 120: 26-33. DOI |
36 | Zhang Y, Sun J, Hu Y, Li S, Xu Q. 2012. Bio-cathode materials evaluation in microbial fuel cells: a comparison of graphite felt, carbon paper and stainless steel mesh materials. Int. J. Hydrogen Energy 37: 16935-16942. DOI ScienceOn |
37 | De Schamphelaire L, Boeckx P, Verstraete W. 2010. Evaluation of biocathodes in freshwater and brackish sediment microbial fuel cells. Appl. Microbiol. Biotechnol. 87: 1675-1687. DOI |
38 | De Schamphelaire L, Cabezas A, Marzorati M, Friedrich MW, Boon N, Verstraete W. 2010. Microbial community analysis of anodes from sediment microbial fuel cells powered by rhizodeposits of living rice plants. Appl. Environ. Microbiol. 76: 2002-2008. DOI ScienceOn |
39 | De Schamphelaire L, Rabaey K, Boeckx P, Boon N, Verstraete W. 2008. Outlook for benefits of sediment microbial fuel cells with two bio-electrodes. Microb. Biotechnol. 1: 446-462. DOI ScienceOn |
40 | Dridi B, Fardeau M-L, Ollivier B, Raoult D, Drancourt M. 2012. Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int. J. Syst. Evol. Microbiol. 62: 1902-1907. DOI |
41 | Franks AE, Nevin KP, Jia H, Izallalen M, Woodard TL, Lovley DR. 2009. Novel strategy for three-dimensional realtime imaging of microbial fuel cell communities: monitoring the inhibitory effects of proton accumulation within the anode biofilm. Energ. Environ. Sci. 2: 113-119. DOI |
42 | Gil G -C, Chang I-S, Kim BH, Kim M , Jang J -K , Park HS, Kim HJ. 2003. Operational parameters affecting the performance of a mediator-less microbial fuel cell. Biosens. Bioelectron. 18: 327-334. DOI ScienceOn |
43 | Logan BE, Regan JM. 2006. Electricity-producing bacterial communities in microbial fuel cells. Trends Microbiol. 14: 512-518. DOI ScienceOn |
44 | Liu S, Song H, Wei S, Yang F, Li X. 2014. Bio-cathode materials evaluation and configuration optimization for power output of vertical subsurface flow constructed wetland - Microbial fuel cell systems. Bioresour. Technol. 166: 575-583. DOI ScienceOn |
45 | Logan BE. 2009. Exoelectrogenic bacteria that power microbial fuel cells. Nat. Rev. Microbiol. 7: 375-381. DOI ScienceOn |
46 | Logan BE, Hamelers B, Rozendal R, Schroder U, Keller J, Freguia S, et al. 2006. Microbial fuel cells: methodology and technology. Environ. Sci. Technol. 40: 5181-5192. DOI ScienceOn |
47 | Nakasono S, Matsumoto N, Saiki H. 1997. Electrochemical cultivation of Thiobacillus ferrooxidans by potential control. Bioelectrochem. Bioener. 43: 61-66. DOI ScienceOn |
48 | Popat SC, Ki D, Rittmann BE, Torres CI. 2012. Importance of OH transport from cathodes in microbial fuel cells. ChemSusChem 5: 1071-1079. DOI ScienceOn |
49 | Sanford RA, Cole JR, Tiedje JM. 2002. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic Myxobacterium. Appl. Environ. Microbiol. 68: 893-900. DOI ScienceOn |
50 | Schamphelaire LD, Bossche LVd, Dang HS, Hofte M, Boon N, Rabaey K, Verstraete W. 2008. Microbial fuel cells generating electricity from rhizodeposits of rice plants. Environ. Sci. Technol. 42: 3053-3058. DOI ScienceOn |
51 | Sun Y, Wei J, Liang P, Huang X. 2012. Microbial community analysis in biocathode microbial fuel cells packed with different materials. AMB Express 2: 21. DOI ScienceOn |
52 | Arends JA, Speeckaert J, Blondeel E, De Vrieze J, Boeckx P, Verstraete W, et al. 2014. Greenhouse gas emissions from rice microcosms amended with a plant microbial fuel cell. Appl. Microbiol. Biotechnol. 98: 3205-3217. DOI ScienceOn |
53 | De Schamphelaire L, Bossche LVd, Dang HS, Hofte M, Boon N, Rabaey K, Verstraete W. 2008. Microbial fuel cells generating electricity from rhizodeposits of rice plants. Environ. Sci. Technol. 42: 3053-3058. DOI ScienceOn |
54 | Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR. 2004. Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments. Microb. Ecol. 48: 178-190. DOI ScienceOn |
55 | Kouzuma A, Kasai T, Nakagawa G, Yamamuro A, Abe T, Watanabe K. 2013. Comparative metagenomics of anodeassociated microbiomes developed in rice paddy-field microbial fuel cells. PLoS One 8: e77443. DOI |
56 | Rozendal RA, Hamelers HVM, Buisman CJN. 2006. Effects of membrane cation transport on pH and microbial fuel cell performance. Environ. Sci. Technol. 40: 5206-5211. DOI ScienceOn |
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