Cloning, Expression, and Characterization of a New Xylanase from Alkalophilic Paenibacillus sp. 12-11 |
Zhao, Yanyu
(Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences)
Meng, Kun (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) Luo, Huiying (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) Yang, Peilong (Department of Microbial Engineering, Feed Research Institute, Chinese Academy of Agricultural Sciences) Shi, Pengjun (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) Huang, Huoqing (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) Bai, Yingguo (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) Yao, Bin (Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences) |
1 | Qiu, Z., P. Shi, H. Luo, Y. Bai, T. Yuan, P. Yang, S. Liu, and B. Yao. 2010. A xylanase with broad pH and temperature adaptability from Streptomyces megasporus DSM 41476, and its potential application in brewing industry. Enzyme Microb. Technol. 46: 506-512. DOI ScienceOn |
2 | Roberge, M., F. Shareck, R. Morosoli, D. Kluepfel, and C. Dupont. 1998. Site-directed mutagenesis study of a conserved residue in family 10 glycanases: Histidine 86 of xylanase A from Streptomyces lividans. Protein Eng. 11: 399-404. DOI |
3 | Schmidt, A., A. Schlacher, W. Steiner, H. Schwab, and C. Kratky. 1998. Structure of the xylanase from Penicillium simplicissimum. Protein Sci. 7: 2081-2088. DOI ScienceOn |
4 | Wang, J., Y. Bai, P. Yang, P. Shi, H. Luo, K. Meng, H. Huang, J. Yin, and B. Yao. 2010. A new xylanase from thermoalkaline Anoxybacillus sp. E2 with high activity and stability over a broad pH range. World J. Microbiol. Biotechnol. 26: 917-924. DOI ScienceOn |
5 | Wang, Q., X. Fan, W. Gao, and J. Chen. 2006. Scouring of knitted cotton fabrics with compound enzymes. J. Text. Res. 27: 27-30. |
6 | Wood, P. J., J. D. Erfle, and R. M. Teather. 1988. Use of complex formation between Congo red and polysaccharides in detection and assay of polysaccharide hydrolases. Methods Enzymol. 160: 59-74. |
7 | Yu, E. K. C., L. U. L. Tan, M. K. H. Chan, L. Deschatelets, and J. N. Saddler. 1987. Production of thermostable xylanase by a thermophilic fungus, Thermoascus aurantiacus. Enzyme Microb. Technol. 9: 16-24. DOI ScienceOn |
8 | Subramaniyan, S. and P. Prema. 2000. Cellulase-free xylanases from Bacillus and other microorganisms. FEMS Microbiol. Lett. 183: 1-7. DOI ScienceOn |
9 | Subramaniyan, S. and P. Prema. 2002. Biotechnology of microbial xylanases: Enzymology, molecular biology, and application. Crit. Rev. Biotechnol. 22: 33-64. DOI ScienceOn |
10 | Sudo, M., M. Sakka, T. Kimyra, K. Ratanakhanokchai, and K. Sakka. 2010. Characterization of Paenibacillus curdlanolyticus intracellular xylanase Xyn10B encoded by the xyn10B gene. Biosci. Biotechnol. Biochem. 74: 2358-2360. DOI ScienceOn |
11 | Sun, H. J., S. Yoshida, Y. Kawabata, N. H. Park, and I. Kusakabe. 2002. Separation of two functional domains of the family F/10 -xylanase from Streptomyces olivaceoviridis E-86 limited proteolysis with papain and some of their properties. Biotechnol. Lett. 24: 595-601. DOI ScienceOn |
12 | Wang, G., Y. Wang, P. Yang, H. Luo, H. Huang, P. Shi, K. Meng, and B. Yao. 2010. Molecular detection and diversity of xylanase genes in alpine tundra soil. Appl. Microbiol. Biotechnol. 87: 1383-1393. DOI ScienceOn |
13 | Henrissat, B. and A. Bairoch. 1996. Updating the sequence-based classification of glycosyl hydrolases. Biochem. J. 316: 695-696. DOI |
14 | Ko, C. H., W. L. Chen, C. H. Tsai, W. N. Jane, C. C. Liu, and J. Tu. 2007. Paenibacillus campinasensis BL11: A wood materialutilizing bacterial strain isolated from black liquor. Bioresour. Technol. 98: 2727-2733. DOI ScienceOn |
15 | Huang, J., G. Wang, and L. Xiao. 2006. Cloning, sequencing and expression of the xylanase gene from a Bacillus subtilis strain B10 in Escherichia coli. Bioresour. Technol. 97: 802-808. DOI ScienceOn |
16 | Hwang, I. T., H. K. Lim, H. Y. Song, S. J. Cho, J. S. Chang, and N. J. Park. 2010. Cloning and characterization of a xylanase, KRICT PX1 from the strain Paenibacillus sp. HPL- 001. Biotechnol. Adv. 28: 594-601. DOI ScienceOn |
17 | Kim, D. Y., M. K. Han, H. W. Oh, K. S. Bae, T. S. Jeong, S. U. Kim, et al. 2010. Novel intracellular GH10 xylanase from Cohnella laeviribosi HY-21: Biocatalytic properties and alterations of substrate specificities by site-directed mutagenesis of Trp residues. Bioresour. Technol. 101: 8814-8821. DOI ScienceOn |
18 | Christov, L. P., G. Szakacs, and H. Balakrishnan. 1999. Production, partial characterization and use of fungal cellulase-free xylanases in pulp bleaching. Process Biochem. 34: 511-517. DOI ScienceOn |
19 | Collins, T., C. Gerday, and G. Feller. 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 29: 3-23. DOI ScienceOn |
20 | Gallardo, O., P. Diaz, and F. I. J. Pastor. 2003. Characterization of a Paenibacillus cell-associated xylanase with high activity on aryl-xylosides: A new subclass of family 10 xylanases. Appl. Microbiol. Biotechnol. 61: 226-233. DOI |
21 | Gibbs, M. D., R. A. Reeves, and P. L. Bergquist. 1995. Cloning, sequencing, and expression of a xylanase gene from the extreme thermophile Dictyoglomus thermophilum Rt46B. 1 and activity of the enzyme on fiber-bound substrate. Appl. Environ. Microbiol. 61: 4403-4408. |
22 | Guo, B., X. Chen, C. Sun, B. Zhou, and Y. Zhang. 2009. Gene cloning, expression and characterization of a new cold-active and salt-tolerant endo--1,4-xylanase from marine Glaciecola mesophila KMM 241. Appl. Microbiol. Biotechnol. 84: 1107-1115. DOI ScienceOn |
23 | Caballero, P. A., M. Gómez, and C. M. Rosell. 2007. Improvement of dough rheology, bread quality and bread shelf-life by enzymes combination. J. Food Process Eng. 81: 42-53. DOI ScienceOn |
24 | Bajpai, P. 1999. Application of enzymes in the pulp and paper industry. Biotechnol. Prog. 15: 147-157. DOI ScienceOn |
25 | Beg, Q. K., M. Kapoor, L. Mahajan, and G. S. Hoondal. 2001. Microbial xylanases and their industrial applications: A review. Appl. Microbiol. Biotechnol. 56: 326-338. DOI |
26 | Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254. DOI ScienceOn |
27 | Liu, Y. and R. F. Whittier. 1995. Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25: 674-681. DOI ScienceOn |
28 | Li, N., K. Meng, Y. Wang, P. Shi, H. Luo, Y. Bai, P. Yang, and B. Yao. 2008. Cloning, expression, and characterization of a new xylanase with broad temperature adaptability from Streptomyces sp. S9. Appl. Microbiol. Biotechnol. 80: 231-240. DOI ScienceOn |
29 | Lineweaver, H. and D. Burk. 1934. The determination of enzyme dissociation constants. J. Am. Chem. Soc. 56: 658-666. DOI |
30 | Liu, L., X. Li, and W. Shao. 2004 Computational analysis of responsible dipeptides for optimum pH in G/11 xylanase. Biochem. Biophys. Res. Commun. 321: 391-396. DOI ScienceOn |
31 | Ossola, M. and Y. M. Galante. 2004. Scouring of flax rove with the aid of enzymes. Enzyme Microb. Technol. 34: 177-186. DOI ScienceOn |
32 | Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680- 685. DOI ScienceOn |
33 | Lee, H., D. Shin, N. Cho, H. Kim, S. Shin, S. Im, H. Blaise Lee, S. Chun, and S. Bai. 2000. Cloning, expression and nucleotide sequences of two xylanase genes from Paenibacillus sp. Biotechnol. Lett. 22: 387-392. DOI ScienceOn |
34 | Maat, J., M. Roza, J. Verbakel, H. Stam, M. J. Santos Da Silva, M. Bosse, et al. 1992. Xylanases and their application in bakery, pp. 349-360. In J. Visser, M. A. Kusters van Someren, G. Beldman, and A. G. J. Voragen (eds.). Xylans and Xylanases. Progress in Biotechnology, No. 7. Elsevier Science Publishers, Amsterdam, The Netherlands. |
35 | Mamo, G., R. Hatti-Kaul, and B. Mattiasson. 2006. A thermostable alkaline active endo--1-4-xylanase from Bacillus halodurans S7: Purification and characterization. Enzyme Microb. Technol. 39: 1492-1498. DOI ScienceOn |
36 | Mamo, G., M. Thunnissen, R. Hatti-Kaul, and B. Mattiasson. 2009. An alkaline active xylanase: Insights into mechanisms of high pH catalytic adaptation. Biochimie 91: 1187-1196. DOI ScienceOn |
37 | Manikandan, K., A. Bhardwaj, N. Gupta, N. K. Lokanath, A. Ghosh, V. S. Reddy, and S. Ramakumar. 2006. Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: Structural insights into alkalophilicity and implications for adaptation to polyextreme conditions. Protein Sci. 15: 1951-1960. DOI ScienceOn |
38 | Mchunu, N. P., S. Singh, and K. Permaul. 2009. Expression of an alkalo-tolerant fungal xylanase enhanced by directed evolution in Pichia pastoris and Escherichia coli. J. Biotechnol. 141: 26- 30. DOI |
39 | Miller, G. L. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428. DOI |
40 | Monis, P. T., S. Giglio, and C. P. Saint. 2005. Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal. Biochem. 340: 24-34. DOI ScienceOn |