Browse > Article

Identification of Novel Esterase from Metagenomic Library of Yangtze River  

Wu, Chao (Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China)
Sun, Baolin (Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China)
Publication Information
Journal of Microbiology and Biotechnology / v.19, no.2, 2009 , pp. 187-193 More about this Journal
Abstract
A metagenomic library of surface-water microbes from the Yangtze River in China was constructed, and a novel esterase, designated as EstY, was isolated and characterized. EstY had 423 amino acids with an estimated molecular mass of 44 kDa and pI of 7.28. It hydrolyzed various p-nitrophenyl esters(acetate, butyrate, caprate, caprylate, laurate, myristate, and palmitate) and its best substrate was p-nitrophenyl caprate(C8). The optimum pH for EstY activity was 9.0 and the optimum temperature was $50^{\circ}C$. Metal ions, such as $Mn^{2+},\;Co^{2+},\;Hg^{2+},\;Zn^{2+},\;and\;Fe^{3+}$, strongly inhibited the activity of EstY, whereas $Mg^{2+}$ was required for maximal activity. Activity remained in the presence of 10% alcohol, acetone, isopropanol, and dimethyl sulfoxide, respectively. An analysis of the amino acid sequence deduced from estY revealed that it had 7 closely related lipolytic enzymes. Moreover, a sequence analysis showed that EstY, like its 7 relatives, did not belong to any known lipolytic enzyme family.
Keywords
EstY; freshwater metagenome; lipolytic enzyme family; phylogenetic tree;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
Times Cited By Web Of Science : 7  (Related Records In Web of Science)
연도 인용수 순위
1 Arpigny, J. L. and K. E. Jaeger. 1999. Bacterial lipolytic enzymes: Classification and properties. Biochem. J. 343 Pt 1: 177-183   DOI   ScienceOn
2 Hardeman, F. and S. Sjoling. 2007. Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment. FEMS Microbiol. Ecol. 59: 524-534   DOI   ScienceOn
3 Hube, B., F. Stehr, M. Bossenz, A. Mazur, M. Kretschmar, and W. Schafer. 2000. Secreted lipases of Candida albicans: Cloning, characterisation and expression analysis of a new gene family with at least ten members. Arch. Microbiol. 174: 362- 374   DOI   ScienceOn
4 Rees, H. C., S. Grant, B. Jones, W. D. Grant, and S. Heaphy. 2003. Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries. Extremophiles 7: 415-421   DOI   ScienceOn
5 Stein, J. L., T. L. Marsh, K. Y. Wu, H. Shizuya, and E. F. DeLong. 1996. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J. Bacteriol. 178: 591-599   DOI   PUBMED
6 Thieme, F., R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Büttner, et al. 2005. Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J. Bacteriol. 187: 7254-7266   DOI   PUBMED
7 Bugg, T. D. 2004. Diverse catalytic activities in the alphabetahydrolase family of enzymes: Activation of H_2, HCN, H_2O_2, and O_2. Bioorg. Chem. 32: 367-375   DOI   PUBMED   ScienceOn
8 Rappe, M. S. and S. J. Giovannoni. 2003. The uncultured microbial majority. Annu. Rev. Microbiol. 57: 369-394   DOI   ScienceOn
9 Robertson, D. E., J. A. Chaplin, G. DeSantis, M. Podar, M. Madden, E. Chi, et al. 2004. Exploring nitrilase sequence space for enantioselective catalysis. Appl. Environ. Microbiol. 70: 2429-2436   DOI   ScienceOn
10 Lee, S. W., K. Won, H. K. Lim, J. C. Kim, G. J. Choi, and K. Y. Cho. 2004. Screening for novel lipolytic enzymes from uncultured soil microorganisms. Appl. Microbiol. Biotechnol. 65: 720-726   DOI   ScienceOn
11 Yun, J., S. Kang, S. Park, H. Yoon, M. J. Kim, S. Heu, and S. Ryu. 2004. Characterization of a novel amylolytic enzyme encoded by a gene from a soil-derived metagenomic library. Appl. Environ. Microbiol. 70: 7229-7235   DOI   PUBMED   ScienceOn
12 Hong, K. S., H. K. Lim, E. J. Chung, E. J. Park, M. H. Lee, J. C. Kim, G. J. Choi, K. Y. Cho, and S. W. Lee. 2007. Selection and characterization of forest soil metagenome genes encoding lipolytic enzymes. J. Microbiol. Biotechnol. 17: 1655-1660   과학기술학회마을   PUBMED   ScienceOn
13 Cottrell, M. T., J. A. Moore, and D. L. Kirchman. 1999. Chitinases from uncultured marine microorganisms. Appl. Environ. Microbiol. 65: 2553-2557   PUBMED   ScienceOn
14 Knietsch, A., T. Waschkowitz, S. Bowien, A. Henne, and R. Daniel. 2003. Construction and screening of metagenomic libraries derived from enrichment cultures: Generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli. Appl. Environ. Microbiol. 69: 1408-1416   DOI   ScienceOn
15 Nierman, W. C., D. DeShazer, H. S. Kim, H. Tettelin, K. E. Nelson, T. Feldblyum, et al. 2004. Structural flexibility in the Burkholderia mallei genome. Proc. Natl. Acad. Sci. U.S.A. 101: 14246-14251   DOI   ScienceOn
16 Park, H. J., J. H. Jeon, S. G. Kang, J. H. Lee, S. A. Lee, and H. K Kim. 2007. Functional expression and refolding of new alkaline esterase, EM2L8 from deep-sea sediment metagenome. Protein Expr. Purif. 52: 340-347   DOI   ScienceOn
17 Elend, C., C. Schmeisser, C. Leggewie, P. Babiak, J. D. Carballeira, H. L.Steele, J. L. Reymond, K. E. Jaeger, and W. R. Streit. 2006. Isolation and biochemical characterization of two novel metagenome-derived esterases. Appl. Environ. Microbiol. 72: 3637-3645   DOI   ScienceOn
18 Jaeger, K. E., B. W. Dijkstra, and M. T. Reetz. 1999. Bacterial biocatalysts: Molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu. Rev. Microbiol. 53: 315-351   DOI   ScienceOn
19 Jaeger, K. E. and T. Eggert. 2002. Lipases for biotechnology. Curr. Opin. Biotechnol. 13: 390-397   DOI   ScienceOn
20 Rondon, M. R., P. R. August, A. D. Bettermann, S. F. Brady, T. H. Grossman, M. R. Liles, et al. 2000. Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66: 2541-2547   DOI   ScienceOn
21 Tirawongsaroj, P., R. Sriprang, P. Harnpicharnchai, T. Thongaram, V. Champreda, S. Tanapongpipat, K. Pootanakit, and L. Eurwilaichitr. 2008. Novel thermophilic and thermostable lipolytic enzymes from a Thailand hot spring metagenomic library. J. Biotechnol. 133: 42-49   ScienceOn
22 Feil, H., W. S. Feil, P. Chain, F. Larimer, G. DiBartolo, A. Copeland, et al. 2005. Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl. Acad. Sci. U.S.A. 102: 11064- 11069   DOI   ScienceOn
23 Henne, A., R. A. Schmitz, M. Bomeke, G. Gottschalk, and R. Daniel. 2000. Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Appl. Environ. Microbiol. 66: 3113-3116   DOI   ScienceOn
24 Lee, M. H., C. H. Lee, T. K. Oh, J. K. Song, and J. H. Yoon. 2006. Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: Evidence for a new family of bacterial lipases. Appl. Environ. Microbiol. 72: 7406- 7409   DOI   ScienceOn
25 Ranjan, R., A. Grover, R. K. Kapardar, and R. Sharma. 2005. Isolation of novel lipolytic genes from uncultured bacteria of pond water. Biochem. Biophys. Res. Commun. 335: 57-65   DOI   ScienceOn
26 Elend, C., C. Schmeisser, H. Hoebenreich, H. L. Steele, and W. R. Streit. 2007. Isolation and characterization of a metagenomederived and cold-active lipase with high stereospecificity for (R)-ibuprofen esters. J. Biotechnol. 130: 370-377   DOI   ScienceOn
27 Lammle, K., H. Zipper, M. Breuer, B. Hauer, C. Buta, H. Brunner, and S. Rupp. 2007. Identification of novel enzymes with different hydrolytic activities by metagenome expression cloning. J. Biotechnol. 127: 575-592   DOI   ScienceOn