Genetic and Phenotypic Diversity of Parathion-Degrading Bacteria Isolated from Rice Paddy Soils
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Choi, Min-Kyeong
(Department of Agricultural Biotechnology, Seoul National University)
Kim, Kyung-Duk (Department of Agricultural Biotechnology, Seoul National University) Ahn, Kyong-Mok (Department of Agricultural Biotechnology, Seoul National University) Shin, Dong-Hyun (Department of Agricultural Biotechnology, Seoul National University) Hwang, Jae-Hong (Department of Agricultural Biotechnology, Seoul National University) Seong, Chi-Nam (Department of Biology, Sunchon National University) Ka, Jong-Ok (Department of Agricultural Biotechnology, Seoul National University) |
1 | Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410 PUBMED ScienceOn |
2 | Horne, I., T. D. Stherland, R. L. Harcourt, R. J. Russell, and J. G. Oakeshott. 2002. Identification of an opd (organophosphate degradation) gene in an Agrobacterium isolate. Appl. Environ. Microbiol. 68: 3372-3376 DOI ScienceOn |
3 | Kim, K. D., J. H. Ahn, T. S. Kim, S. C. Park, C. N. Seong, H. G. Song, and J. O. Ka. 2009. Genetic and phenotypic diversity of fenitrothion-degrading bacteria isolated from soils. J. Microbiol. Biotechnol. 19: 113-120 과학기술학회마을 DOI ScienceOn |
4 | Kim, T. S., M. S. Kim, M. K. Jung, M. J. Joe, J. H. Ahn, K. H. Oh, M. H. Lee, M. K. Kim, and J. O. Ka. 2005. Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil. J. Microbiol. Biotechnol. 15: 376-383 과학기술학회마을 ScienceOn |
5 | Korea Crop Protection Association. 2005. Agrochemical Year Book 2005 |
6 | Park, I. H. and J. O. Ka. 2003. Isolation and characterization of 4-(2,4-dichlorophenoxy) butyric acid-degrading bacteria from agricultural soil. J. Microbiol. Biotechnol. 13: 243-250 ScienceOn |
7 | Ragnardottir, K. V. 2000. Environmental fate and toxicology of organophosphate pesticides. J. Geol. Soc. London 157: 859-879 DOI ScienceOn |
8 | Siddavattam, D., K. Syed, B. Manavathi, S. B. Pakala, and M. Merrick. 2003. Transposon-like organization of the plasmidborne organophosphate degradation (opd) gene cluster found in Flavobacterium sp. Appl. Environ. Microbiol. 69: 2533-2539 DOI ScienceOn |
9 | Sender, C. M., D. T. Gibson, D. M. Munnecke, and J. H. Lancaster. 1982. Plasmid involvement in parathion hydrolysis by Pseudomonas diminuta. Appl. Environ. Microbiol. 37: 886-891 ScienceOn |
10 | Horne, I., R. L. Harcourt, T. D. Sutherland, R. J. Russell, and J. G. Oakesshott. 2002. Identification of a Pseudomonas monteilli strain with a novel phosphotriesterase. FEMS Microbiol. Lett. 206: 51-55 DOI ScienceOn |
11 | Siddaramappa, R., K. P. Rajaram, and N. Sethunathan. 1973. Degradation of parathion by bacteria isolated from flooded soil. Am. Soc. Microbiol. 26: 846-849 |
12 | Li, X., J. He, and S. Li. 2007. Isolation of a chlorpyrifosdegrading bacterium, Sphingomonas sp. Dsp-2, and cloning of the mpd gene. Res. Microb. 158: 143-149 DOI ScienceOn |
13 | Rani, N. L. and D. Lalithakumari. 1994. Degradation of methyl parathion by Pseudomonas putida. Can. J. Microbiol. 40: 1000-1006 DOI ScienceOn |
14 | Barles, R. W., C. G. Daughton, and D. P. H. Hsieh. 1979. Accelerated parathion degradation in soil inoculated with acclimated bacteria under field conditions. Environ. Contamin. Toxicol. 8: 647-660 DOI ScienceOn |
15 | Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-148. In E. Stackebrandt and M. Goodfellow (eds.). Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, Chichester, England |
16 | Park, H. D. and J. O. Ka. 2003. Genetic and phenotypic diversity of dichlorprop-degrading bacteria isolated from soil. J. Microbiol. 41: 7-15 |
17 | Ohshiro, K., T. Kakuta, N. Nikaidou, T. Watanabe, and T. Uchiyama. 1999. Molecular cloning and nucleotide sequencing of organophosphorus insecticide hydrolase gene from Arthrobacter sp. strain B-5. J. Biosci. Bioeng. 87: 531-534 DOI ScienceOn |
18 | Kim, T. S., J. H. Ahn, M. K. Choi, H. Y. Weon, M. S. Kim, C. N. Seong, H. G. Song, and J. O. Ka. 2007. Cloning and expression of a parathion hydrolase gene from a soil bacterium, Burkholderia sp. JBA3. J. Microbiol. Biotechnol. 17: 1890-1893 과학기술학회마을 PUBMED ScienceOn |
19 | Singh, B. K. and A. Walker. 2006. Microbial degradation of organophosphorus compounds. FEMS Microbiol. Rev. 30: 428-471 DOI ScienceOn |
20 | Cheng, T. C., S. P. Harvey, and A. N. Stroup. 1993. Purification and properties of a highly active organophosphorus acid hydrolase from Alteromonas undina. Appl. Environ. Microbiol. 59: 3138-3140 PUBMED ScienceOn |
21 | Qing, H., Z. Zhang, Y. Hong, and S. Li. 2007. A microcosm study on bioremediation of fenitrothion-contaminated soil using Burkholderia sp. FDS-1. Int. Biodeterior. Biodegrad. 59: 55-61 DOI ScienceOn |
22 | Hardy, K. G. 1993. Plasmid: A Practical Approach, pp. 99-100. 2nd Ed. Oxford University Press, Walton Street, New York |
23 | Tago, K., E. Sekiya, A. Kiho, C. Katsuyama, Y. Hoshito, N. Yamada, K. Hirano, H. Sawada, and M. Hayatsu. 2006. Diversity of fenitrothion-degrading bacteria in soil from distant geographical areas. Microbes Environ. 21: 58-64 DOI ScienceOn |
24 | de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58: 2180-2187 PUBMED ScienceOn |
25 | Nelson, L. M. 1982. Biologically induced hydrolysis of parathion in soil: Isolation of hydrolyzing bacteria. Soil Biol. Biochem. 14: 219-222 DOI ScienceOn |
26 | EPA. 2000. http://www.epa.gov/REDs/factsheets/p155fct.pdf |
27 | Hynes, M. F., R. Simon, and A. Puhler. 1985. The development of plasmid-free strains of Agrobacterium tumefaciens by using incompatibility with Rhizobium meliloti plasmid to eliminate pAtC58. Plasmid 13: 99-105 DOI ScienceOn |
28 | Nelson, L. M., B. Yaron, and P. H. Nye. 1982. Biologically induced hydrolysis of parathion in soil: Kinetics and modeling. Soil Biol. Biochem. 14: 223-228 DOI ScienceOn |
29 | Munnecke, D. M. and D. P. H. Hsieh. 1975. Pathways of microbial metabolism of parathion. Am. Soc. Microb. 31: 63-69 ScienceOn |
30 | Kim, M. S., J. H. Ahn, M. K. Jung, J. H. Yu, D. H. Joo, M. C. Kim, et al. 2005. Molecular and cultivation-based characterization of bacterial structure in rice field soil. J. Microbiol. Biotechnol. 15: 1087-1093 ScienceOn |
31 | McConnell, R., F. Pachecob, K. Wahlberg, W. Klein, O. Malespin, R. Magnotti, M. Akerblom, and D. Murray. 1999. Subclinical health effects of environmental pesticide contamination in a developing country: Cholinesterase depression in children. Environ. Res. 81: 87-91 DOI ScienceOn |
32 | Ahn, J. H., M. C. Kim, H. C. Shin, M. K. Choi, S. S. Yoon, T. S. Kim, H. G. Song, G. H. Lee, and J. O. Ka. 2006. Improvement of PCR amplification bias for community structure analysis of soil bacteria by denaturing gradient gel electrophoresis. J. Microbiol. Biotechnol. 16: 1561-1569 과학기술학회마을 ScienceOn |
33 | Hayatsu, M., M. Hirano, and S. Tokuda. 2000. Involvement of two plasmids in fenitrothion degradation by Burkholderia sp. strain NF100. Appl. Environ. Microbiol. 66: 1737-1740 DOI ScienceOn |
34 | Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker Jr., P. R. Saxman, J. M. Stredwick, et al. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28(1): 173-174 DOI ScienceOn |
35 | Dumas, D. P., S. R. Caldwell, J. R. Wild, and F. M. Raushel. 1989. Purification and properties of phosphotriesterase from Pseudomonas diminuta. J. Biol. Chem. 264: 19659-19665 PUBMED |
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