A Novel pH-Stable, Bifunctional Xylanase Isolated from a Deep-Sea Microorganism, Demequina sp. JK4 |
Meng, Xin
(State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University)
Shao, Zongze (Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State of Oceanic Administration) Hong, Yuzhi (College of Plant Science and Technology, Huazhong Agricultural University) Lin, Ling (State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University) Li, Chanjuan (State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University) Liu, Ziduo (State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University) |
1 | Ducros, Valérie., S. J. Charnock, U. Derewenda, Z. S. Derewenda, Z. Dauter, C. Dupont, Shareck, Fran ois et al. 2000. Substrate specificity in glycoside hydrolase family 10: Structural and kinetic analysis of the Streptomyces lividans xylanase 10A. J. Biol. Chem. 275:23020-23026 DOI ScienceOn |
2 | Li, N., K. Meng, Y. R. Wang, P. J. Shi, H. Y. Luo, Y. G. Bai, P. L. Yang, and B. Yao. 2008. Cloning, expression, and characterization of a new xylanase with broad temperature adaptability from Streptomyces sp. S9. Appl. Microbiol. Biotechnol. 80: 231-240 DOI ScienceOn |
3 | Simpson, P. J., H. F. Xie, D. N. Bolam, H. J. Gilbert, and M. P. Williamson. 2000. The structural basis for the ligand specificity of family 2 carbohydrate-binding modules. J. Biol. Chem. 275:41137-41142 DOI ScienceOn |
4 | Thomson, J. A. 1993. Molecular biology of xylan degradation. FEMS Microbiol. Rev. 10: 65-82 PUBMED ScienceOn |
5 | Tomme, P., R. A. Warren, and N. R. Gilkes. 1995. Cellulose hydrolysis by bacteria and fungi. Adv. Microb. Physiol. 37: 1-81 DOI PUBMED |
6 | Wu, S. J., B. Liu, and X. B. Zhang. 2006. Characterization of a recombinant thermostable xylanase from deep-sea thermophilic Geobacillus sp. MT-1 in East Pacific. Appl. Microbiol. Biotechnol. 72: 1210-1216 DOI ScienceOn |
7 | Derewenda, U., L. Swenson, R. Green, Y. Wei, R. Morosoli, F. Shareck, D. Kluepfel, and Z. S. Derewenda. 1994. Crystal structure, at 2.6- resolution, of the Streptomyces lividans xylanase A, a member of the F family of beta-1,4-D-glycanases. J. Biol. Chem. 269: 20811-20814 PUBMED |
8 | Collins, T., C. Gerday, and G. Feller. 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 29:3-23 DOI ScienceOn |
9 | Hekmat, O., Y. W. Kim, S. J. Williams, S. M. He, and S. G. Withers. 2005. Active-site peptide 'fingerprinting' of glycosidases in complex mixtures by mass spectrometry: Discovery of a novel retaining -1,4-glycanase in Cellulomonas fimi. J. Biol. Chem. 280: 35126-35135 DOI ScienceOn |
10 | Bguin, P. 1983. Detection of cellulase activity in polyacrylamide gels using Congo red-stained agar replicas. Anal. Biochem. 131:333-336 DOI ScienceOn |
11 | Heo, S., J. Kwak, H. W. Oh, D. S. Park, K. S. Bae, D. H. Shin, and H. Y. Park. 2006. Characterization of an extracellular xylanase in Paenibacillus sp. HY-8 Isolated from an herbivorous longicorn beetle. J. Microbiol. Biotechnol. 16: 1753-1759 ScienceOn |
12 | Leskinen, S., A. Mntyl, R. Fagerstrm, J. Vehmaanper, R. Lantto, M. Paloheimo, and P. Suominen. 2005. Thermostable xylanases, Xyn10A and Xyn11A, from the actinomycete Nonomuraea flexuosa: Isolation of the genes and characterization of recombinant Xyn11A polypeptides produced in Trichoderma reesei. Appl. Microbiol. Biotechnol. 67: 495-505 DOI ScienceOn |
13 | Fontes, C., G. P. Hazlewood, E. Morag, J. Hall, B. H. Hirst, and H. J. Gilbert. 1995. Evidence for a general role for noncatalytic thermostabilizing domains in xylanases from thermophilic bacteria. Biochem. J. 307: 151-158 ScienceOn |
14 | Miller, G. L. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428 DOI |
15 | Boraston, A. B., D. Nurizzo, V. Notenboom, .Valrie Ducros, D. R. Rose, D. G. Kilburn, and G. J. Davies. 2002. Differential oligosaccharide recognition by evolutionarily-related -1,4 and -1,3 glucan-binding modules. J. Mol. Biol. 319: 1143-1156 DOI ScienceOn |
16 | Hashimoto, H., Y. Tamai, F. Okazaki, Y. Tamaru, T. Shimizu, T. Araki, and M. Sato. 2005. The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan. FEBS Lett. 579: 4324-4328 DOI ScienceOn |
17 | Teather, R. M. and P. J. Wood. 1982. Use of Congo red polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl. Environ. Microbiol. 43: 777-780 PUBMED ScienceOn |
18 | Martnez-Trujillo, A., O. Prez-Avalos, and T. Ponce-Noyola. 2003. Enzymatic properties of a purified xylanase from mutant pn-120 of Cellulomonas flavigena. Enzyme Microb. Technol. 32: 401-406 DOI ScienceOn |
19 | Sahu, S. K., A. G. Krishna, and S. N. Gummadi. 2008. Overexpression of recombinant human phospholipid scramblase 1 in E. coli and its purification from inclusion bodies. Biotechnol. Lett. 30: 2131-2137 DOI ScienceOn |
20 | Abou Hachem, M., E. N. Karlsson, E. Bartonek-Rox , S. Raghothama, P. J. Simpson, H. J. Gilbert, M. P. Williamson, and O. Holst. 2000. Carbohydrate-binding modules from a thermostable Rhodothermus marinus xylanase: Cloning, expression and binding studies. Biochem. J. 345: 53-60 DOI ScienceOn |
21 | Lin, L., X. Meng, P. F. Liu, Y. Z. Hong, G. B. Wu, X. L. Huang, et al. 2008. Improved catalytic efficiency of endo--1, 4-glucanase from Bacillus subtilis BME-15 by directed evolution. Appl. Microbiol. Biotechnol. 82: 671-679 PUBMED |
22 | Khandeparker, R. and M. T. Numan. 2008. Bifunctional xylanases and their potential use in biotechnology. J. Ind. Microbiol. Biot. 35: 635-644 DOI ScienceOn |
23 | Sakka, K., Y. Kojima, T. Kondo, S. Karita, K. Ohmiya, and K. Shimada. 1993. Nucleotide sequence of the Clostridium stercorarium xynA gene encoding xylanase A: Identification of catalytic and cellulose binding domains. Biosci. Biotechnol. Biochem. 57: 273-277 DOI ScienceOn |
24 | Polizeli, M., A. C. S. Rizzatti, R. Monti, H. F. Terenzi, J. A. Jorge, and D. S. Amorim. 2005. Xylanases from fungi:Properties and industrial applications. Appl. Microbiol. Biotechnol. 67: 577-591 DOI ScienceOn |
25 | Prade, R. A. 1996. Xylanases: From biology to biotechnology. Biotechnol. Genet. Eng. Rev. 13: 101-131 DOI PUBMED ScienceOn |
26 | Sambrook, J. and D. W. Russell. 2001. Cold Spring Habor Laboratory Press, Cold Spring Harbor, NY. Molecular Cloning:A Laboratory Manual |
27 | Zhang, H. L., B. Yao, Y. R. Wang, T. Z. Yuan, W. Z. Zhang, N. F. Wu, and Y. L. Fan. 2003. Expression of xylanase gene xyna from Streptomyces olivaceoviridis A1 in Escherichia coli and Pichia pastoris. Sheng Wu Gong Cheng Xue Bao 19: 41-45 PUBMED |
28 | Lykidis, A., K. Mavromatis, N. Ivanova, I. Anderson, M. Land, G. DiBartolo, et al. 2007. Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX. J. Bacteriol. 189: 2477-2486 DOI ScienceOn |
29 | Morosoli, R., J. L. Bertrand, F. Mondou, F. Shareck, and D. Kluepfel. 1986. Purification and properties of a xylanase from Streptomyces lividans. Biochem. J. 239: 587-592 ScienceOn |
30 | Shareck, Franois, C. Roy, M. Yaguchi, R. Morosoli, and D. Kluepfel. 1991. Sequences of 3 genes specifying xylanases in Streptomyces lividans. Gene 107: 75-82 DOI ScienceOn |