Generation of Expressed Sequence Tags for Immune Gene Discovery and Marker Development in the Sea Squirt, Halocynthia roretzi |
Kim, Young-Ok
(Biotechnology Research Institute, National Fisheries Research and Development Institute)
Cho, Hyun-Kook (Department of Molecular Biology, Pusan National University) Park, Eun-Mi (Biotechnology Research Institute, National Fisheries Research and Development Institute) Nam, Bo-Hye (Biotechnology Research Institute, National Fisheries Research and Development Institute) Hur, Young-Baek (Research Center for Aquaculture Environment) Lee, Sang-Jun (Biotechnology Research Institute, National Fisheries Research and Development Institute) Cheong, Jae-Hun (Department of Molecular Biology, Pusan National University) |
1 | Delaunay, A., A. D. Isnard, and M. B. Toledano. 2000. sensing through oxidation of the Yap1 transcription factor. EMBO J. 19: 5157-5166 DOI ScienceOn |
2 | Edgar, P. F. 1995. Hucolin, a new corticosteroid-binding protein from human plasma with structural similarities to ficolins, transforming growth proteins. FEBS Lett. 375: 159-161 DOI |
3 | Fritz, I. B., P. S. Tung, and M. Ailenberg. 1993. Proteases and antiproteases in the seminiferous tubule, pp. 217-235. In L. D. Russell and M. D. Griswold (eds.). The Sertoli Cell. Cache River Press, Clearwater, FL |
4 | Huang, S. S., P. O. Grady, and J. S. Huang. 1998. Human transforming growth complex is a latent form of transforming growth factor . J. Biol. Chem. 263: 1535-1541 |
5 | Lublin, D. M. 2005. [Review] Cromer and DAF: Role in health and disease. Immunohematology 21: 39-47 |
6 | Miwa, T. and W. C. Song. 2001. Membrane complement regulatory proteins: Insight from animal studies and relevance to human diseases. Int. Immunopharmacol. 1: 445-459 DOI ScienceOn |
7 | Sambrook, J., E. F. Frisch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Habor Laboratory Press, Cold Spring Habor, NY, U.S.A |
8 | Sottrup-Jensen, L. 1989. Alpha-macroglobulins: Structure, shape, and mechanism of proteinase complex formation. J. Biol. Chem. 264: 11539-11542 |
9 | Chu, C. T., D. S. Rubenstein, J. J. Enghild, and S. V. Pizzo. 1991. Mechanism of insulin incorporation into : Implication for the study of peptide and growth factor binding. Biochemistry 30: 1551-1560 DOI ScienceOn |
10 | Lu, J., Y. Le, L. Kon, J. Chan, and S. H. Lee. 1996. Biosynthesis of human ficolin, an Escherichia coli-binding protein, by monocytes: Comparison with the synthesis of two macrophagespecific proteins, C1q and the mannose receptor. Immunology 89: 289-294 DOI ScienceOn |
11 | Serapion, J., H. Kucuktas, J. Feng, and Z. Liu. 2004. Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus). Mar. Biotechnol. 6: 364-377 DOI ScienceOn |
12 | Morgan, B. P. 1999. Regulation of the complement membrane attack pathway. Crit. Rev. Immunol. 19: 173-198 |
13 | Parsons, J. D. 1995. Improved tools for DNA comparison and clustering. Comp. Appl. Biosci. 1: 603-613 |
14 | Blount, P. and J. P. Merlie. 1991. BIP associates with newly synthesized subunits of the mouse muscle nicotinic receptor. J. Cell Biol. 113: 1125-1132 DOI ScienceOn |
15 | Liu, Z., P. Li, A. Kocabas, Z. Ju, A. Karsi, D. Cao, and A. Patterson. 2001. Microsatellite-containing genes from the channel catfish brain: Evidence of trinucleotide repeat expansion in the coding region of nucleotide excision repair gene RAD23B. Biochem. Biophys. Res. Commun. 289: 317-324 DOI ScienceOn |
16 | Somerville, C. and S. Somerville. 1999. Plant functional genetics. Science 285: 380-383 DOI |
17 | Makabe, K. W., T. Kawashima, S. Kawashima, T. Minokawa, A. Adachi, H. Kawamura, et al. 2001. Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development. Development 128: 2555-2567 |
18 | Carmel-Harel, O. and G. Storz. 2000. Roles of the glutathioneand thioredoxin-dependent reduction systems in the Escherichia coli and Saccharomyces cerevisiae responses to oxidative stress. Annu. Rev. Microbiol. 54: 439-461 DOI ScienceOn |
19 | James, K. 1990. Interactions between cytokines and . Immunol. Today 11: 163-166 DOI ScienceOn |
20 | Gasque, P. 2004. Complement: A unique innate immune sensor for danger signals. Mol. Immunol. 41: 1089-1098 DOI ScienceOn |
21 | Murakawa, K., K. Matsubara, A. Fukushima, J. Yoshii, and K. Okubo. 1994. Chromosomal assignments of 3'-directed partial cDNA sequences representing novel genes expressed in granulocytoid cells. Genomics 23: 379-389 DOI ScienceOn |
22 | Kantety, R. V., M. La Rota, D. E. Matthews, and M. E. Sorrells. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol. 48: 501-510 DOI ScienceOn |
23 | Hass, I. G. and M. Wabl. 1983. Immunoglobulin heavy chain binding protein. Nature 306: 387-389 DOI ScienceOn |
24 | Cho, H. K., B. H. Nam, H. J. Kong, H. S. Han, Y. B. Hur, T. J. Choi, Y. H. Choi, W. J. Kim, and J. H. Cheong. 2008. Identification of softness syndrome-associated candidate genes and DNA sequence variation in the sea squirt, Halocynthia roretzi. Mar. Biotechnol. 10: 447-456 DOI ScienceOn |
25 | Cordeiro, G.., M. R. Casu, C. L. McIntyre, J. M. Manners, and R. J. Henry. 2001. Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci. 160: 1115-1123 DOI ScienceOn |
26 | Le, Y., S. H. Lee, O. L. Kon, and J. Lu. 1998. Human L-ficolin: plasma levels, sugar specificity, and assignment of its lectin activity to the fibrinogen-like (FBG) domain. FEBS Lett. 425: 367-370 DOI ScienceOn |
27 | He, C., L. Chen, M. Simmons, P. Li, S. Kim, and Z. J. Liu. 2003. Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Anim. Genet. 34: 445-448 DOI ScienceOn |
28 | Hurtley, S. M., D. G. Bole, H. Hoover-Litty, A. Helenius, and C. S. Copeland. 1989. Interactions of misfolded influenza virus hemagglutinin with binding protein (Bip). J. Cell Biol. 108: 2117-2126 DOI ScienceOn |
29 | Ichijo, H., L. Ronnstrand, K. Miyagawa, H. Ohashi, C. H. Heldin, and K. Miyazono. 1991. Purification of transforming growth 1 binding proteins from porcine uterus membranes. J. Biol. Chem. 266: 22459-22464 |
30 | Ichijo, H., U. Hellman, C. Wernstedt, L. J. Gonez, L. Claesson- Welsh, C. H. Helden, and K. Miyazono. 1993. Molecular cloning and characterization of ficolin, a multimeric protein with fibrinogen- and collagen-like domains. J. Biol. Chem. 268: 14505-14513 |
31 | Kuge, S., M. Arita, A. Murayama, K. Maeta, S. Izawa, Y. Inoue, and A. Nomoto. 2001. Regulation of the yeast Yap1p nuclear export signal is mediated by redox signal-induced reversible disulfide bond formation. Mol. Cell. Biol. 21: 6139-6150 DOI ScienceOn |
32 | Harumiya, S., A. Omori, T. Sugiura, Y. Fukumoto, H. Tachikawa, and D. Fujimoto. 1995. EBP-37, a new elastin-binding protein in human plasma: Structural similarity to ficolins, tranforming growth proteins. J. Biochem. 117: 1029-1035 DOI |
33 | He, G., R. Meng, M. Newman, G. Gao, R. N. Pittman, and C. S. Prakash. 2003. Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.). BMC Plant Biol. 3: 1-6 DOI ScienceOn |
34 | Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search program. Nucleic Acids Res. 25: 3389-3402 DOI ScienceOn |
35 | Lublin, D. M., S. Kompelli, J. R. Storry, and M. E. Reid. 2000. Molecular basis of Cromer blood group antigens. Transfusion 40: 208-213 DOI ScienceOn |