Annotation and Expression Profile Analysis of cDNAs from the Antarctic Diatom Chaetoceros neogracile |
Jung, Gyeong-Seo
(Department of Life Science, College of Natural Science, Hanyang University)
Lee, Choul-Gyun (Department of Biotechnology, Institute of Industrial Biotechnology, Inha University) Kang, Sung-Ho (Polar Environmental Research Division, Korea Ocean Polar Research Institute (KOPRI)) Jin, Eon-Seon (Department of Life Science, College of Natural Science, Hanyang University) |
1 | Armbrust, E. V., J. A. Berges, C. Bowler, B. R. Green, D. Martinez, N. H. Putnam, S. Zhou, A. E. Allen, K. E. Apt, M. Bechner, M. A. Brzezinski, B. K. Chaal, A. Chiovitti, A. K. Davis, M. S. Demarest, J. C. Detter, T. Glavina, D. Goodstein, M. Z. Hadi, U. Hellsten, M. Hildebrand, B. D. Jenkins, J. Jurka, V. V. Kapitonov, N. Kröger, W. W. Lau, T. W. Lane, F. W. Larimer, J. C. Lippmeier, S. Lucas, M. Medina, A. Montsant, M. Obornik, M. S. Parker, B. Palenik, G. J. Pazour, P. M. Richardson, T. A. Rynearson, M. A. Saito, D. C. Schwartz, K. Thamatrakoln, K. Valentin, A. Vardi, F. P. Wilkerson, and D. S. Rokhsar. 2003. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 306: 79-86 DOI |
2 | Bhaya, D. and A. R. Grossman. 1993. Characterization of gene clusters encoding the fucoxanthin chlorophyll proteins of the diatom Phaeodactylum tricornutum. Nucleic Acids Res. 21: 4458-4466 DOI ScienceOn |
3 | Buchner, J. 1999. Hsp90 & Co. - a holding for folding. Trends Biochem. Sci. 24: 136-141 DOI |
4 | Csermelyl, P. and S. C. Lakhotia. 1998. Molecular biology of stress responses in India. Cell Stress Chaperones 3: 1-5 DOI ScienceOn |
5 | Cummins, I., D. J. Cole, and R. Edwards. 1999. A role for glutathione transferases functioning as glutathione peroxidases in resistance to multiple herbicides in black-grass. Plant J. 18: 285-292 DOI ScienceOn |
6 | Eom, H. S., S. H. Park, C. G. Lee, and E. S. Jin. 2005. Gene expression profiling of eukaryotic microalga, Haematococcus pluvialis. J. Microbiol. Biotechnol. 15: 1060-1066 과학기술학회마을 |
7 | Kampranis, S. C., R. Damianova, M. Atallah, G. Toby, G. Kondi, P. N. Tsichlis, and A. M. Makris. 2000. A novel plant glutathione S-transferase/peroxidase suppresses Bax lethality in yeast. J. Biol. Chem. 275: 29207-29216 DOI ScienceOn |
8 | Kroth-Pancic, P. 1995. Nucleotide sequence of two cDNAs encoding fucoxanthin chlorophyll a/c proteins in the diatom Odontella sinensis. Plant Mol. Biol. 27: 825-828 DOI ScienceOn |
9 | Langer, T. 2000. AAA proteases: Cellular machines for degrading membrane proteins. Trends Biochem. Sci. 25: 247-251 DOI |
10 | Lindahl, M., S. Tabak, L. Cseke, E. Pichersky, B. Andersson, and Z. Adam. 1996. Identification, characterization, and molecular cloning of a homologue of the bacterial FtsH protease in chloroplasts of higher plants. J. Biol. Chem. 271: 29329-29334 DOI ScienceOn |
11 | Nixon, P. J., M. Baker, M. Boehm, R. de Vries, and J. Komenda. 2005. FtsH-mediated repair of the photosystem II complex in response to light stress. J. Exp. Bot. 56: 357-363 DOI ScienceOn |
12 | Noctor, G., L. Gomez, H. Vanacker, and C. H. Foyer. 2002. Interactions between biosynthesis, compartmentation and transport in the control of glutathione homeostasis and signaling. J. Exp. Bot. 53: 1283-1304 DOI ScienceOn |
13 | Ohad, I., D. J. Kyle, and C. J. Arntzen. 1984. Membrane protein damage and repair: Removal and replacement of inactivated 32-kilodalton polypeptides in chloroplast membranes. J. Cell Biol. 270: 14919-14927 |
14 | Ali, A., S. Bharadwaj, R. O'Carroll, and N. Ovsenek. 1998. HSP90 interacts with and regulates the activity of heat shock factor 1 in Xenopus ocytes. Mol. Cell. Biol. 18: 4949-4960 DOI |
15 | Pratt, W. B. and D. O. Toft. 2003. Regulation of signaling protein function and trafficking by the hsp90/hsp70-based chaperone machinery. Exp. Biol. Med. (Maywood). 228: 111-133 DOI |
16 | Roxas, V. P., R. K. Smith, E. R. Allen, and R. D. Allen. 1997. Overexpression of glutathione S-transferase/glutathione peroxidase enhances the growth of transgenic tobacco seedlings during stress. Nat. Biotechnol. 15: 988-991 DOI ScienceOn |
17 | Bailey, S., E. Thompson, P. J. Nixon, P. Horton, C. W. Mullineaux, C. Robinson, and N. H. Mann. 2002. A critical role for the Var2 FtsH homologue of Arabidopsis thaliana in the photosystem II repair cycle in vivo. J. Biol. Chem. 277: 2006-2011 DOI ScienceOn |
18 | Marrs, K. A. 1996. The functions and regulation of glutathione S-transferases in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 127-158 DOI ScienceOn |
19 | Kyle, D. J., I. Ohad, and C. J. Arntzen. 1984. Membrane protein damage and repair: Selective loss of a quinoneprotein function in chloroplast membranes. Proc. Natl. Acad. Sci. USA 81: 4070-4074 |
20 | Yoshioka, M., S. Uchida, H. Mori, K. Komayama, S. Ohira, N. Morita, T. Nakanishi, and Y. Yamamoto. 2006. Quality control of photosystem II. Cleavage of reaction center D1 protein in spinach thylakoids by FtsH protease under moderate heat stress. J. Biol. Chem. 281: 21660-21669 DOI ScienceOn |
21 | Dixon, D. P., A. Lapthorn, and R. Edwards. 2002. Plant glutathione transferases. Protein family review. Genome Biol. 3: reviews 3004.1-3004.10 |
22 | Sakamoto, W., T. Tamura, Y. Hanba-Tomita, and M. Murat. 2002. The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles. Genes Cells 7: 769-780 DOI ScienceOn |
23 | Ceron, G., F. Garcia CamaCho, A. Sanchez Miron, J. M. Fernandez Sevilla, Y. Chisti, and E. M. Grima. 2006. Mixotrophic production of marine microalga Phaeodactylum tricornutum on various carbon sources. J. Microbiol. Biotechnol. 16: 689-694 과학기술학회마을 |
24 | Maheswari, U., A. Montsant, J. Goll, S. Krishnasamy, K. R. Rajyashri, V. M. Patell, and C. Bowler. 2005. The Diatom EST Database. Nucleic Acids Res. 33: 344-347 DOI ScienceOn |
25 | Yamamoto, Y. 2001. Quality control of photosystem II. Plant Cell Physiol. 42: 121-128 DOI ScienceOn |
26 | Caron, L., D. Douady, M. Quinet-Szely, S. de Goer, and C. Berkaloff. 1996. Gene structure of a chlorophyll a/c-binding protein from a brown alga: Presence of an intron and phylogenetic implications. J. Mol. Evol. 43: 270-280 DOI ScienceOn |
27 | Jakob, U., I. Meyer, H. Bügl, S. André, J. C. Bardwell, and J. Buchner. 1995. Structural organization of prokaryotic and eukaryotic Hsp90. Influence of divalent cations on structure and function. J. Biol. Chem. 270: 14412-14419 DOI ScienceOn |
28 | Mock, T. and N. Hoch. 2005. Long-term temperature acclimation of photosynthesis in steady-state cultures of the polar diatom Fragilariopsis cylindrus. Photosynth. Res. 85: 307-317 DOI ScienceOn |
29 | Armbrust, E. V., J. B. Berges, C. Bowler, B. R. Green, D. Martinez, N. H. Putnam, S. Zhou, A. E. Allen, K. E. Apt, M. Bechner, et al. 2004. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 306: 79-86 DOI |
30 | Falciatore, A. and C. Bowler. 2002. Revealing the molecular secrets of marine diatoms. Annu. Rev. Plant Biol. 53: 109-130 DOI |
31 | Park, S. H., J. E. W. Polle, A. Melis, T. K. Lee, and E. S. Jin. 2006. Up-regulation of photoprotection and PSII-repair gene expression by irradiance in the unicellular green alga Dunaliella salina. Marine Biotechnol. 8: 120-128 DOI ScienceOn |
32 | Apt, K. E., S. K. Clendennen, D. A. Powers, and A. R. Grossman. 1995. The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera. Mol. Gen. Genet. 246: 455-464 DOI ScienceOn |
33 | Grossman, A. R., A. Manodori, and D. Snyder. 1990. Lightharvesting proteins of diatoms: Their relationship to the chlorophyll a/b binding proteins of higher plants and their mode of transport into plastids. Mol. Gen. Genet. 224: 91-100 |
34 | Mock, T. and K. Valentin. 2004. Photosynthesis and cold acclimation: Molecular evidence from a polar diatom. J. Phycol. 40: 732-741 DOI ScienceOn |
35 | Scala, S., N. Carels, A. Falciatore, M. L. Chiusano, and C. Bowler. 2002. Genome properties of the diatom Phaeodactylum tricornutum. Plant Physiol. 129: 993-1002 DOI ScienceOn |
36 | Durnford, D. G., R. Aebersold, and B. R. Green. 1996. The fucoxanthin-chlorophyll proteins from a chromophyte alga are part of a large multigene family: Structural and evolutionary relationships to other light harvesting antennae. Mol. Gen. Genet. 253: 377-386 DOI ScienceOn |
37 | Barber, J. and B. Andersson. 1992. Too much of a good thing: Light can be bad for photosynthesis. Trends Biochem. Sci. 17: 61-66 DOI ScienceOn |
38 | Morgan-Kiss, R. M., J. C. Priscu, T. Pocock, L. Gudynaite- Savitch, and N. P. Huner. 2006. Adaptation and acclimation of photosynthetic microorganisms to permanently cold environments. Microbiol. Mol. Biol. Rev. 70: 222-252 DOI ScienceOn |
39 | Sakamoto, W., A. Zaltsman, Z. Adam, and Y. Takahashi. 2003. Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes. Plant Cell 15: 2843-2855 DOI ScienceOn |
40 | Aro, E.-M., I. Virgin, and B. Andersson. 1993. Photoinhibition of photosystem II. Inactivation, protein damage and turnover. Biochim. Biophys. Acta 1143: 113-134 DOI ScienceOn |
41 | Willmund, F. and M. Schroda. 2005. Heat shock protein 90C is a bona fide Hsp90 that interacts with plastidic HSP70B in Chlamydomonas reinhardtii. Plant Physiol. 138: 2310-2322 DOI ScienceOn |
42 | Apt, K., D. Bhaya, and A. R. Grossman. 1994. Characterization of genes encoding the light-harvesting proteins in diatoms: Biogenesis of the fucoxanthin chlorophyll a/c protein complex. J. Appl. Phycol. 6: 225-230 DOI ScienceOn |
43 | Wegele, H., L. Muller, and J. Buchner. 2004. Hsp70 and Hsp90 - a relay team for protein folding. Rev. Physiol. Biochem. Pharmacol. 151: 1-44 DOI |
44 | Passaquet, C. and C. Lichtlé. 1995. Molecular study of a light-harvesting apoprotein of Giraudyopsis stellifer (Chrysophyceae). Plant Mol. Biol. 29: 135-148 DOI ScienceOn |
45 | Eppard, M. and E. Rhiel. 1998. The genes encoding lightharvesting subunits of Cyclotella cryptica (Bacillariophyceae) constitute a complex and heterogeneous family. Mol. Gen. Genet. 260: 335-345 DOI ScienceOn |
46 | Mauch, F. and R. Dudler. 1993. Differential induction of distinct glutathione S-transferases of wheat by xenobiotics and by pathogen attack. Plant Physiol. 102: 1193-1201 DOI ScienceOn |
47 | Mock, T., A. Krell, G. Glöckner, Ü. Kolukisaoglu, and K. Valentin. 2005. Analysis of expressed sequence Tag (ESTs) from the polar diatom Fracilariopsis cylindrus. J. Phycol. 42: 78-85 DOI ScienceOn |
48 | Richter, K. and J. Buchner. 2001. Hsp90: Chaperoning signal transduction. J. Cell. Physiol. 188: 281-290 DOI ScienceOn |