Monitoring of Microbial Diversity and Activity During Bioremediation of Crude Oil-Contaminated Soil with Different Treatments |
Baek, Kyung-Hwa
(Environmental Biotechnology, Research Center, KRIBB)
Yoon, Byung-Dae (Environmental Biotechnology, Research Center, KRIBB) Kim, Byung-Hyuk (Environmental Biotechnology, Research Center, KRIBB) Cho, Dae-Hyun (Environmental Biotechnology, Research Center, KRIBB) Lee, In-Sook (Department of Life Science, Ewha Womans University) Oh, Hee-Mock (Environmental Biotechnology, Research Center, KRIBB) Kim, Hee-Sik (Environmental Biotechnology, Research Center, KRIBB) |
1 | Baek, K.-H., B.-D. Yoon, I.-S. Lee, H.-M. Oh, and H.-S. Kim. 2006. Biodegradation of aliphatic aromatic hydrocarbons by Nocardia sp. H17-1. Geomicrobiol. J. 23: 253-259 DOI ScienceOn |
2 | Bento, F. M., F. A. O. Camargo, B. C. Okeke, and W. T. Frankenberger. 2005. Comparative bioremediation of soils contaminated with diesel oil by natural attenuation, biostimulation and bioaugmentation. Biores. Technol. 96: 1049-1055 DOI ScienceOn |
3 | Cheung, P. and B. K. Kinkle. 2005. Effects of nutrients and surfactants on pyrene mineralization and Mycobacterium spp. populations in contaminated soil. Soil Biol. Biochem. 37: 1401-1405 DOI ScienceOn |
4 | Kim, H.-S., B.-D. Yoon, D.-H. Choung, H.-M. Oh, T. Katsuragi, and Y. Tani. 1999. Characterization of a biosurfactant, mannosylerythritol lipid produced from Candida sp. SY16. Appl. Microbiol. Biotechnol. 52: 713- 721 DOI ScienceOn |
5 | Margesin, R. and F. Schinner. 2001. Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in Alpine glacier sking area. Appl. Environ. Microbiol. 67: 3127-3133 DOI ScienceOn |
6 | MacNaughton, S. J., J. R. Stephen, A. D. Venosa, G. A. Davis, Y. J. Chang, and D. C. White. 1999. Microbial population changes during bioremediation of an experimental oil spill. Appl. Environ. Microbiol. 65: 3566-3574 |
7 | Nicolaisen, M. H. and N. B. Ramsing. 2002. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50: 189-203 DOI ScienceOn |
8 | Shannon, C. E. and W. Weaver. 1949. The Mathematical Theory of Communication, University of Illinois Press, Urbana, IL |
9 | Simpson, E. H. 1949. Measurement of diversity. Nature 163: 688 DOI |
10 | Watanabe, K. 2001. Microorganisms relevant to bioremediation. Curr. Opin. Biotechnol. 12: 237-241 DOI ScienceOn |
11 | Watanabe, K. and N. Hamamura. 2003. Molecular and physiological approaches to understand the ecology of pollutant degradation. Curr. Opin. Biotechnol. 14: 289-295 DOI ScienceOn |
12 | Widada, J., H. Nojiri, and T. Omori. 2002. Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation. Appl. Microbiol. Environ. 60: 45-59 |
13 | Hua, Z., Y. Chen, G. Du, and J. Chen. 2004. Effect of biosurfactants produced by Candida antarctica on the biodegradation of petroleum compounds. World J. Microbiol. Biotechnol. 20: 25-29 DOI |
14 | Jung, S.-Y., J.-H. Lee, Y.-G. Chai, and S.-J. Kim. 2005. Monitoring of microorganisms added into oil-contaminated microenvironments by terminal-restriction fragment length polymorphism analysis. J. Microbiol. Biotechnol. 15: 1170- 1177 과학기술학회마을 |
15 | Kim, H.-S., J.-W. Jeon, S.-B. Kim, H.-M. Oh, T.-J. Kwon, and B.-D. Yoon. 2002. Surface and physico-chemical properties of glycolipid biosurfactant, mannosylerythritol lipid, from Candida antarctica. Biotechnol. Lett. 24: 1637- 1641 DOI ScienceOn |
16 | Sarkar, D., M. Ferguson, R. Datta, and S. Birnbaum. 2005. Bioremediation of petroleum hydrocarbons in contaminated soils: Comparison of biosolids addition, carbon supplementation, and monitored natural attenuation. Environ. Poll. 136: 187- 195 DOI ScienceOn |
17 | Kirk, J. L., L. A. Beaudette, M. Hart, P. Moutoglis, J. L. Klironomos, H. Lee, and J. T. Trevors. 2004. Methods of studying soil microbial diversity. J. Microbiol. Methods 58: 169-188 DOI ScienceOn |
18 | Muyzer, G., S. Hottentrager, A. Teske, and C. Wawer. 1996. Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA. A new molecular approach to analyze the genetic diversity of mixed microbial communities, pp. 3.4.4:1- 3.4.4:23. In A. D. L. Akkermans, J. D. van Elsas, and F. J. De Bruijin (eds.), Molecular Microbial Ecology Manual, 2nd Ed. Kluwer Academic Publishers, The Netherlands |
19 | Ron, E. Z. and E. Rosenberg. 2002. Biosurfactant and oil bioremediation. Curr. Opin. Biotechnol. 13: 249-252 DOI ScienceOn |
20 | Stapleton, R. D., G. S. Sayler, J. K. Boggs, E. L. Libelo, T. Stauffer, and W. G. Macintyre. 2000. Changes in subsurface catabolic gene frequencies during natural attenuation of petroleum hydrocarbons. Environ. Sci. Technol. 34: 1991- 1999 DOI ScienceOn |
21 | Hendrichx, B., W. Dejonghe, F. Faber, W. Boenne, L. Bastiaens, W. Verstraete, E. M. Top, and D. Springael. 2006. PCR-DGGE method to assess the diversity of BTEX monooxygenase genes at contaminated sites. FEMS Microbiol. Ecol. 55: 262-273 DOI ScienceOn |
22 | Baek, K.-H., H.-S. Kim, S.-H. Moon, I.-S. Lee, H.-M. Oh, and B.-D. Yoon. 2004. Effects of soil types on the biodegradation of crude oil by Nocardia sp. H17-1. J. Microbiol. Biotechnol. 14: 901-905 |
23 | Roling, W. F., M. G. Milner, M. Jones, K. Lee, F. Daniel, R. J. P. Swannell, and I. M. Head. 2002. Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl. Environ. Microbiol. 68: 5537-5548 DOI ScienceOn |
24 | Seklemova, E., A. Pavlova, and K. Kovacheva. 2001. Biostimulation based bioremediation of diesel fuel: Field demonstration. Biodegradation 12: 311-316 DOI ScienceOn |
25 | Dua, M., A. Singh, N. Sethunathan, and A. K. Johri. 2002. Biotechnology and bioremediation: Succession and limitation. Appl. Microbiol. Biotechnol. 59: 143-152 DOI ScienceOn |
26 | Kaplan, C. W. and C. Kitts. 2004. Bacterial succession in a petroleum land treatment unit. Appl. Environ. Microbiol. 70: 1777-1786 DOI ScienceOn |
27 | Ruberto, L., S. C. Vazquez, and W. P. MacCormack. 2003. Effectiveness of the natural bacterial flora, biostimulation and bioaugmentation on the bioremediation of hydrocarbon contaminated Antarctic soil. Int. Biodeter. Biodegrad. 52: 115-125 DOI ScienceOn |
28 | Iwamoto, T., K. Tani, K. Nakamura, Y. Suzuki, M. Kitagawa, M. Eguchi, and M. Nasu. 2000. Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE. FEMS Microbiol. Ecol. 32: 129-141 DOI ScienceOn |
29 | Ahn, J.-H., M.-S. Kim, M.-C. Kim, J.-S. Lim, G.-T. Lee, J. K. Yun, T. Kim, T. Kim, and J.-O. Ka. 2006. Analysis of bacterial diversity and community structure in forest soils contaminated with fuel hydrocarbon. J. Microbiol. Biotechnol. 16: 704-715 과학기술학회마을 |
30 | Bong, B. W., W. R. Lahner, W. R. Sullivan, and J. R. Paterek. 2003. Degradation of straight-chain aliphatic and high-molecular weight polycyclic aromatic hydrocarbons by a strain of Mycobacterium austroafricanum. J. Appl. Microbiol. 94: 230-239 DOI ScienceOn |