Analysis of Poly(3-Hydroxybutyrate) Granule-Associated Proteome in Recombinant Escherichia coli |
Han Mee-Jung
(Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical & Biomolecular Engineering, BioProcess Engineering Research Center, and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology)
Park Si-Jae (Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical & Biomolecular Engineering, BioProcess Engineering Research Center, and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology) Lee Jeong-Wook (Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical & Biomolecular Engineering, BioProcess Engineering Research Center, and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology) Min Byoung-Hoon (Cell Biology Laboratory, Department of Biology, Hallym University) Lee Sang-Yup (Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical & Biomolecular Engineering, BioProcess Engineering Research Center, and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology) Kim Soo-Jin (Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical & Biomolecular Engineering, BioProcess Engineering Research Center, and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology) Yoo Jong-Shin (Korea Basic Science Institute) |
1 | Allen, S. P., J. O. Polazzi, J. K. Gierse, and A. M. Easton. 1992. Two novel heat shock genes encoding proteins produced in response to heterologous protein expression in Escherichia coli. J. Bacteriol. 174: 6938-6947 DOI |
2 | Bova, M. P., H. S. McHaourab, Y. Han, and B. K. Fung. 2000. Subunit exchange of small heat shock proteins. Analysis of oligomer formation of alphaA-crystallin and Hsp27 by fluorescence resonance energy transfer and site-directed truncations. J. Biol. Chem. 275: 1035-1042 DOI ScienceOn |
3 | Braunegg, G., B. Sonnleitner, and R. M. Lafferty. 1978. A rapid gas chromatographic method for the determination of poly--hydroxybutyric acid in microbial biomass. Eur. J. Appl. Microbiol. Biotechnol. 6: 29-37 DOI |
4 | Bruey, J. M., C. Ducasse, P. Bonniaud, L. Ravagnan, S. A. Susin, C. Diaz-Latoud, S. Gurbuxani, A. P. Arrigo, G. Kroemer, E. Solary, and C. Garrido. 2000. Hsp27 negatively regulates cell death by interacting with cytochrome c. Nat. Cell Biol. 2: 645-652 DOI ScienceOn |
5 | Choi, J., S. Y. Lee, and K. B. Han. 1998. Cloning of the Alcaligenes latus polyhydroxyalkanoates biosynthesis genes and use of these genes for enhanced production of poly(3-hydroxybutyrate) in Escherichia coli. Appl. Environ. Microbiol. 64: 4897-4903 |
6 | Choi, J., S. Y. Lee, K. Shin, W. G. Lee, S. J. Park, H. N. Chang, and Y. K. Chang. 2002. Pilot scale production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) by fed-batch culture of recombinant Escherichia coli. Biotechnol. Bioprocess Eng. 7: 371-374 DOI ScienceOn |
7 | Han, M.-J., K. J. Jeong, J.-S. Yoo, and S. Y. Lee. 2003. Engineering Escherichia coli for increased productivity of serine-rich proteins based on proteome profiling. Appl. Environ. Microbiol. 69: 5772-5781 DOI |
8 | Han, M.-J., S. S. Yoon, and S. Y. Lee. 2001. Proteome analysis of metabolically engineered Escherichia coli producing poly(3-hydroxybutyrate). J. Bacteriol. 183: 301-308 DOI ScienceOn |
9 | Kim, K. K., R. Kim, and S. H. Kim. 1998. Crystal structure of a small heat-shock protein. Nature 394: 595-599 DOI ScienceOn |
10 | Kitagawa, M., M. Miyakawa, Y. Matsumura, and T. Tsuchido. 2002. Escherichia coli small heat shock proteins, IbpA and IbpB, protect enzymes from inactivation by heat and oxidants. Eur. J. Biochem. 269: 2907-2917 DOI ScienceOn |
11 | Kucharczyk, K., E. Laskowska, and A. Taylor. 1991. Response of Escherichia coli cell membranes to induction of lambda cl857 prophage by heat shock. Mol. Microbiol. 5: 2935-2945 DOI ScienceOn |
12 | Laskowska, E., A. Wawrzynow, and A. Taylor. 1996. IbpA and IbpB, the new heat-shock proteins, bind to endogenous Escherichia coli proteins aggregated intracellularly by heat shock. Biochimie 78: 117-122 DOI ScienceOn |
13 | Lee, S. Y. 1996. Bacterial polyhydroxyalkanoates. Biotechnol. Bioeng. 49: 1-14 DOI |
14 | Leroux, M. R., R. Melki, B. Gordon, G. Batelier, and E. P. Candido. 1997. Structure-function studies on small heat shock protein oligomeric assembly and interaction with unfolded polypeptides. J. Biol. Chem. 272: 24646-24656 DOI ScienceOn |
15 | Matsumoto, K., H. Matsusaki, K. Taguchi, M. Seki, and Y. Doi. 2002. Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. Biomacromolecules 3: 787-792 DOI |
16 | McCool, G. J. and M. C. Cannon. 1999. Polyhydroxyalkanoate inclusion body-associated proteins and coding region in Bacillus megaterium. J. Bacteriol. 181: 585-592 |
17 | Sugiyama, Y., A. Suzuki, M. Kishikawa, R. Akutsu, T. Hirose, M. M. Waye, S. K. Tsui, S. Yoshida, and S. Ohno. 2000. Muscle develops a specific form of small heat shock protein complex composed of MKBP/HSPB2 and HSPB3 during myogenic differentiation. J. Biol. Chem. 275: 1095-1104 DOI ScienceOn |
18 | Prieto, M. A., B. Buhler, K. Jung, B. Witholt, and B. Kessler. 1999. PhaF, a polyhydroxyalkanoate-granule-associated protein of Pseudomonas oleovorans GPo1 involved in the regulatory expression system for pha genes. J. Bacteriol. 181: 858-868 |
19 | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. U.S.A |
20 | Steinbuchel, A. and B. Fuchtenbusch. 1998. Bacterial and other biological systems for polyester production. Trends Biotechnol. 16: 419-427 DOI ScienceOn |
21 | Switzer, R. C., C. R. Merril, and S. Shifrin. 1979. A highly sensitive silver stain for detecting proteins and peptides in polyacrylamide gels. Anal. Biochem. 98: 231-237 DOI ScienceOn |
22 | Wieczorek, R., A. Pries, A. Steinbüchel, and F. Mayer. 1995. Analysis of a 24-kilodalton protein associated with the polyhydroxyalkanoic acid granules in Alcaligenes eutrophus. J. Bacteriol. 177: 2425-2435 DOI |
23 | Madison, L. L. and G. W. Huisman. 1999. Metabolic engineering of poly(3-hydroxyalkanoates): From DNA to plastic. Microbiol. Mol. Biol. Rev. 63: 21-53 |
24 | Potter, M., H. Muller, F. Reinecke, R. Wieczorek, F. Fricke, B. Bowien, B. Friedrich, and A Steinbuchel. 2004. The complex structure of polyhydroxybutyrate (PHB) granules: Four orthologous and paralogous phasins occur in Ralstonia eutropha. Microbiology 150: 2301-2311 DOI ScienceOn |
25 | Taylor, S. W., E. Fahy, and S. S. Ghosh. 2003. Global organellar proteomics. Trends Biotechnol. 21: 82-88 DOI ScienceOn |
26 | Steinbuchel, A., K. Aerts, W. Babel, C. Follner, M. Liebergesell, M. K. Madkour, F. Mayer, U. Pieper-Furst, A. Pries, and H. E. Valentin. 1995. Considerations on the structure and biochemistry of bacterial polyhydroxyalkanoic acid inclusions. Can. J. Microbiol. 41: 94-105 DOI |
27 | Veinger, L., S. Diamant, J. Buchner, and P. Goloubinoff. 1998. The small heat-shock protein IbpB from Escherichia coli stabilizes stress-denatured proteins for subsequent refolding by a multichaperone network. J. Biol. Chem. 273: 11032-11037 DOI ScienceOn |
28 | Shearstone, J. R. and F. Baneyx. 1999. Biochemical characterization of the small heat shock protein IbpB from Escherichia coli. J. Biol. Chem. 274: 9937-9945 DOI ScienceOn |
29 | Steinbuchel, A., E. Hustede, M. Liebergesell, U. Pieper, A. Timm, and H. Valentin. 1992. Molecular basis for biosynthesis and accumulation of polyhydroxyalkanoic acids in bacteria. FEMS Microbiol. Rev. 9: 217-230 |
30 | Park, S. J., J.-I. Choi, and S. Y. Lee. 2005. Short-chainlength polyhydroxyalkanoates: Synthesis in metabolically engineered Escherichia coli and medical applications. J. Microbiol. Biotechnol. 15: 206-215 과학기술학회마을 |
31 | Griebel, R., Z. Smith, and J. M. Merrick. 1968. Metabolism of poly-beta-hydroxybutyrate. I. Purification, composition, and properties of native poly-beta-hydroxybutyrate granules from Bacillus megaterium. Biochemistry 7: 3676-3681 DOI ScienceOn |
32 | Hart, R. A., U. Rinas, and J. E. Bailey. 1990. Protein composition of Vitreoscilla hemoglobin inclusion bodies produced in Escherichia coli. J. Biol. Chem. 265: 12728-12733 |
33 | Fukui, T., T. Kichise, T. Iwata, and Y. Doi. 2001. Characterization of 13 kDa granule-associated protein in Aeromonas caviae and biosynthesis of polyhydroxyalkanoates with altered molar composition by recombinant bacteria Biomacromolecules 2: 148-153 DOI ScienceOn |
34 | Pieper-Furst, U., M. H. Madkour, F. Mayer, and A. Steinbuchel. 1994. Purification and characterization of a 14- kilodalton protein that is bound to the surface of polyhydroxyalkanoic acid granules in Rhodococcus ruber. J. Bacteriol. 176: 4328-4337 DOI |
35 | Kim, T.-K., M. T. Vo, H.-D. Shin, and Y.-H. Lee. 2005. Molecular structure of the PHA synthesis gene cluster from new mcl-PHA producer Pseudomonas putida KCTC1639. J. Microbiol. Biotechnol. 15: 1120-1124 과학기술학회마을 |
36 | Studer, S. and F. Narberhaus. 2000. Chaperone activity and homo- and hetero-oligomer formation of bacterial small heat shock proteins. J. Biol. Chem. 275: 37212-37218 DOI ScienceOn |
37 | Basha, E., G. J. Lee, L. A. Breci, A. C. Hausrath, N. R. Buan, K. C. Giese, and E. Vierling. 2004. The identity of proteins associated with a small heat shock protein during heat stress in vivo indicates that these chaperones protect a wide range of cellular functions. J. Biol. Chem. 279: 7566-7575 DOI ScienceOn |
38 | Huber, L. A., K. Pfaller, and I. Vietor. 2003. Organelle proteomics: Implications for subcellular fractionation in proteomics. Circ. Res. 92: 962-968 DOI ScienceOn |
39 | Pieper-Furst, U., M. H. Madkour, F. Mayer, and A. Steinbuchel. 1995. Identification of the region of a 14-kilodalton protein of Rhodococcus ruber that is responsible for the binding of this phasin to polyhydroxyalkanoic acid granules. J. Bacteriol. 177: 2513-2523 DOI |
40 | Maehara, A., S. Ueda, H. Nakano, and T. Yamane. 1999. Analyses of a polyhydroxyalkanoic acid granule-associated 16-kilodalton protein and its putative regulator in the pha locus of Paracoccus denitrificans. J. Bacteriol. 181: 2914-2921 |
41 | Liebergesell, M., K. Sonomoto, M. Madkour, F. Mayer, and A. Steinbüchel. 1994. Purification and characterization of the poly(hydroxyalkanoic acid) synthase from Chromatium vinosum and localization of the enzyme at the surface of poly(hydroxyalkanoic acid) granules. Eur. J. Biochem. 226: 71-80 DOI |
42 | Nam, I.-Y., H. Myung, and K. Joh. 2004. Molecular cloning, purification, and characterization of an extracellular nuclease from Aeromonas hydrophila ATCC14715. J. Microbiol. Biotechnol. 14: 178-181 |
43 | Potter, M., M. H. Madkour, F. Mayer, and A. Steinbuchel. 2002. Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16. Microbiology 148: 2413-2426 DOI |
44 | Wang, F. and S. Y. Lee. 1997. Production of poly(3-hydroxybutyrate) by fed-batch culture of filamentation-suppressed recombinant Escherichia coli. Appl. Environ. Microbiol. 63: 4756-4769 |
45 | Lee, G. J., A. M. Roseman, H. R. Saibil, and E. Vierling. 1997. A small heat shock protein stably binds heat-denatured model substrates and can maintain a substrate in a foldingcompetent state. EMBO J. 16: 659-671 DOI ScienceOn |
46 | Jurgen, B., H. Y. Lin, S. Riemschneider, C. Scharf, P. Neubauer, R. Schmid, M. Hecker, and T. Schweder. 2000. Monitoring of genes that respond to overproduction of an insoluble recombinant protein in Escherichia coli glucoselimited fed-batch fermentations. Biotechnol. Bioeng. 70: 217-224 DOI ScienceOn |
47 | Schembri, M. A., A. A. Woods, R. C. Bayly, and J. K. Davies. 1995. Identification of a 13-kDa protein associated with the polyhydroxyalkanoic acid granules from Acinetobacter spp. FEMS Microbiol. Lett. 133: 277-283 DOI |
48 | Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685 DOI ScienceOn |
49 | Inagawa, Y., Y. Inoue, M. Shiraki, and T. Saito. 2002. Identification and characterization of poly-3-hydroxybutyrate granule-associated protein, PGA12 and PGA16 in Zoogloea ramigera I-16-M. Int. J. Biol. Macromol. 30: 55-61 DOI ScienceOn |
50 | Ehrnsperger, M., S. Graber, M. Gaestel, and J. Buchner. 1997. Binding of non-native protein to Hsp25 during heat shock creates a reservoir of folding intermediates for reactivation. EMBO J. 16: 221-229 DOI ScienceOn |
51 | Jeong, K. J. and S. Y. Lee. 2002. Excretory production of human -endorphin into culture medium by using outer membrane protein F as a fusion partner in recombinant Escherichia coli. Appl. Environ. Microbiol. 68: 4979-4985 DOI |
52 | Han, M.-J., S. J. Park, T. J. Park, and S. Y. Lee. 2004. Roles and applications of small heat shock proteins in the production of recombinant proteins in Escherichia coli. Biotechnol. Bioeng. 88: 426-436 DOI ScienceOn |
53 | Mergulhao, F. J. M., G. A. Monteiro, J. M. S. Cabral, and M. A. Taipa. 2004. Design of bacterial vector systems for the production of recombinant proteins in Escherichia coli. J. Microbiol. Biotechnol. 14: 1-14 DOI ScienceOn |
54 | Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254 DOI ScienceOn |