repABC- Type Replicator Region of Megaplasmid pAtC58 in Agrobacterium tumefaciens C58 |
LEE KO-EUN
(Department of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University)
PARK DAE-KYUN (Department of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University) BAEK CHANG-HO (Department of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University) HWANG WON (Department of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University) KIM KUN-SOO (Department of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University) |
1 | Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410 DOI |
2 | Baek, C.-H. and K.-S. Kim. 2003. lacZ- and aph-based reporter vectors for in vivo expression technology. J. Microbiol. Biotechnol. 13: 872-880 |
3 | Bartosik, D., J. Baj, and M. Wlodarczyk. 1998. Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1. Microbiology 144: 3149-3157 DOI ScienceOn |
4 | Dessaux, Y., J. Tempe, and S. K. Farrand. 1987. Genetic analysis of mannityl opine catabolism in octopine-type Agrobaterium tumefaciens strain 15955. Mol. Gen. Genet. 208: 301-308 DOI |
5 | Gallie, D. R., M. Hagiya, and C. I. Kado. 1985. Analysis of Agrobacterium tumefaciens plasmid pTiC58 replication region with a novel high-copy-number derivative. J. Bacteriol. 161: 1034-1041 |
6 | Jouanin, L. 1984. Restriction map of an agropine-type Ri plasmid and its homologies with Ti plasmids. Plasmid 12: 91-102 DOI ScienceOn |
7 | Kho, D.-H., J.-H. Jang, H.-S. Kim, K.-S. Kim, and J. K. Lee. 2003. Quorum sensing of Rhodobacter sphaeroides negatively regulates cellular poly--hydroxybutyrate content under aerobic growth conditions. J. Microbiol. Biotechnol. 13: 477-481 과학기술학회마을 |
8 | Ramirez-Romero, M. A., N. E. Soberon, A. Perez-Oseguera, J. M. Tellez-Sosa, and M. A. Cevallos. 2000. Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid. J. Bacteriol. 182: 3117- 3124 DOI |
9 | Ramirez-Romero, M. A., J. Tellez-Sosa, H. Barrios, A. Perez-Oseguera, V. Rosas, and M. A. Cevallos. 2001. RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon. Mol. Microbiol. 42: 195-204 DOI |
10 | Turner, S. L. and J. P. W. Young. 1995. The replicator region of the Rhizobium leguminosarum cryptic plasmid pRL8JI. FEMS Microbiol. Lett. 133: 53-58 DOI |
11 | del Solar. G., R. Giraldo, M. J. Ruiz-Echevarria, M. Espinosa, and R. Diaz-Orejas. 1998. Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. June: 434-464 |
12 | Kim, K.-S. and S. K. Farrand. 1996. Ti plasmid-encoded genes responsible for catabolism of the crown gall opine mannopine by Agrobacterium tumefaciens are homologs of the T-region genes responsible for synthesis of this opine by the plant tumor. J. Bacteriol. 178: 3275-3284 DOI |
13 | Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., U.S.A |
14 | Ramirez-Romero, M. A., P. Bustos, L. Girard, O. Rodriguez, M. A. Cevallos, and G. Davilla. 1997. Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli. Microbiology 143: 2825-2831 DOI ScienceOn |
15 | Freiberg, C., R. Fellay, A. Bairoch, W. J. Broughton, A. Rosenthal, and X. Perret. 1997. Molecular basis of symbiosis between Rhizobium and legumes. Nature (London) 387: 394-401 DOI ScienceOn |
16 | Kim, T., M.-S. Kim, M.-K. Jung, M.-J. Joe, J.-H. Ahn, K.-H. Oh, M. Lee, M. Kim, and J.-O. Ka. 2005. Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil. J. Microbiol. Biotechnol. 15: 376-383 과학기술학회마을 |
17 | Nishiguchi, R., M. Takanami, and A. Oka. 1987. Characterization and sequence determination of the replicator region in the hairy-root-inducing plasmid pRiA4b. Mol. Gen. Genet. 206: 1-8 DOI |
18 | Cangelosi, G. A., E. A. Best, G. Martinetti, and E. W. Nester. 1991. Genetic analysis of Agrobacterium. Methods Enzymol. 204: 384-397 DOI |
19 | Papas, K. M. and S. C. Winans. 2003. The RepA and RepB autorepressors and TraR play opposing roles in the regulation of a Ti plasmid repABC operon. Mol. Microbiol. 49: 441-455 DOI ScienceOn |
20 | Suzuki, K., N. Ohta, Y. Hattori, M. Uraji, A. Kato, and K. Yoshida. 1998. Novel structural difference between nopaline-and octopine-type trbJ genes: Construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochem. Biophys. Acta 1396: 1-7 DOI ScienceOn |
21 | Baek, C.-H., S. K. Farrand, D. K. Park, K. E. Lee, W. Hwang, and K.-S. Kim. 2005. Genes for utilization of deoxyfructosyl glutamine (DFG), an amadori compound, are widely dispersed in the family Rhizobiaceae. FEMS Microbiol. Ecol. 53: 221-233 DOI ScienceOn |
22 | Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene 70: 191-197 DOI ScienceOn |
23 | Tabata, S., P. J. J. Hooykaas, and A. Oka. 1989. Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3. J. Bacteriol. 171: 1665-1672 DOI |
24 | Van Montagu, M. and J. Shell. 1979. The Plasmid of Agrobacterium tumefaciens. Elsevier/North Holland Biomedical Press, Amsterdam, The Netherlands |
25 | Rosenberg, C. and C. Huguet. 1984. The pAtC58 plasmid of Agrobacterium tumefaciens is not essential for tumor induction. Mol. Gen. Genet. 196: 533-536 DOI |
26 | Baek, C.-H., D. K. Park, K. E. Lee, W. Hwang, I. H. Kim, J. Maeng, and K.-S. Kim. 2004. Genes for the catabolism of deoxyfructosyl glutamine in pAtC58 are attributed to utilization of octopine in Agrobacterium tumefaciens strain NT1. J. Microbiol. Biotechnol. 14: 822-828 DOI ScienceOn |
27 | Bignell, C. and C. M. Thomas. 2001. The bacterial ParA-ParB partitioning proteins. J. Biotechnol. 91: 1-34 DOI ScienceOn |
28 | Simon, R., U. Priefer, and A. Puhler. 1983. A broad host range mobilization for in vivo genetic engineering: Transposon mutagenesis in gram-negative bacteria. Biotechnology NOV: 784-791 |
29 | Palmer, K. M., S. L. Turner, and J. P. W. Young. 2000. Sequence diversity of the plasmid replication gene repC in the Rhizobiaceae. Plasmid 44: 209-219 DOI ScienceOn |
30 | Baek, C.-H., S. K. Farrand, K. E. Lee, D. K. Park, J. K. Lee, and K.-S. Kim. 2003. Convergent evolution of amadori opine catabolic systems in plasmids of Agrobacterium tumefaciens. J. Bacteriol. 185: 513-524 DOI |
31 | Li, P.-L. and S. K. Farrand. 2000. The replicator of the nopaline-type Ti plasmid pTiC58 is a member of the repABC family and is influenced by the TraR-dependent quorum-sensing system. J. Bacteriol. 182: 179-188 DOI |
32 | Cevallos, M., H. Porta, J. Izquierdo, C. Tun-Garrido, A. García-de-los-Santos, G. Davila, and S. Brom. 2002. Rhizobium etli CFN42 contains at least three plasmids of the repABC family: A structural and evolutionary analysis. Plasmid 48: 104-116 DOI ScienceOn |
33 | Van Larebeke, N., G. Engeler, M. Holsters, S. Van den Elsacker, I. Zaenen, R. A. Shilperoort, and J. Shell. 1974. Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability. Nature 252: 169-170 DOI ScienceOn |
34 | Bartosik, D., M. Szymanik, and M. Wlodarczyk. 2001. Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1. J. Biotechnol. 183: 6234-6243 |
35 | Sciaky, D., A. L. Montoya, and M. D. Chilton. 1978. Fingerprints of Agrobacterium Ti plasmids. Plasmid 1: 238- 253 DOI ScienceOn |
36 | Zhang L., P. J. Murphy, A. Kerr, and M. E. Tate. 1993. Agrobacterium conjugation and gene regulation by N-acyl--homoserine lactones. Nature 362: 446-448 DOI ScienceOn |
37 | Mercado-Blanco, J. and J. Olivares. 1994. The large nonsymbiotic plasmid pRmeGR4a of Rhizobium melioti GR4 encodes a protein involved in replication that has homology with the RepC protein of Agrobacterium plasmids. Plasmid 32: 75-79 DOI ScienceOn |
38 | Rigottier-Gois, L., S. L. Turner, J. P. W. Young, and N. Amarger. 1998. Distribution of repC plasmid-replication sequences among plasmids and isolates of Rhizobium leguminosarum bv. viciae from field populations. Microbiology 144: 771-780 DOI ScienceOn |
39 | Soberon, N., T. Venkova-Canova, M. A. Ramirez-Romero, J. Tellez-Sosa, and M. A. Cevallos. 2004. Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli. Plasmid 51: 203- 216 DOI ScienceOn |
40 | Nair, G. R., Z. Liu, and A. N. Binns. 2003. Reexamining the role of the accessory plasmid pAtC58 in the virulence of Agrobacterium tumefaciens strain C58. Plant Physiol. 133: 989-999 DOI ScienceOn |
41 | Papas, K. M. and S. C. Winans. 2003. A luxR-type regulator from Agrobacterium tumefaciens elevates Ti plasmid copy number by activating transcription of plasmid replication genes. Mol. Microbiol. 48: 1059-1073 DOI ScienceOn |