Sphingobacterium composti sp. nov., a Novel DNase-Producing Bacterium Isolated from Compost |
Ten Leonid N.
(Department of Biological Sciences, Korea Advanced Institute of Science and Technology)
Liu, Qing-Mei (Department of Biological Sciences, Korea Advanced Institute of Science and Technology) Im Wan-Taek (Department of Biological Sciences, Korea Advanced Institute of Science and Technology) Aslam Zubair (Department of Biological Sciences, Korea Advanced Institute of Science and Technology) Lee, Sung-Taik (Department of Biological Sciences, Korea Advanced Institute of Science and Technology) |
1 | Buck, J. D. 1982. Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl. Environ. Microbiol. 44: 992-993 |
2 | Cappuccino, J. G. and N. Sherman. 2002. Microbiology: A Laboratory Manual, 6th Ed. Benjamin Cummings, San Francisco |
3 | Kouker, G. and K.-E Jaeger. 1987. Specific and sensitive plate assay for bacterial lipases. Appl. Environ. Microbiol. 53: 211-213 |
4 | Shivaji, S., M. K. Ray, S. N. Rao, L. Saisree, M. V. Jagannadham, G. S. Kumar, G. S. N. Reddy, and P. M. Bhargava. 1992. Sphingobacterium antarcticus sp. nov., a psychotrophic bacterium from soils of Schirmacher Oasis, Antarctica. Int. J. Syst. Bacteriol. 42: 102-106 DOI |
5 | Stackebrandt, E. and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44: 846-849 DOI ScienceOn |
6 | Tschech, A. and N. Pfennig. 1984. Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch. Microbiol. 137: 163-167 DOI |
7 | Hall, M. G. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98 |
8 | Kim, M. K., W.-T. Im, H. Ohta, M. Lee, and S.-T. Lee. 2005. Sphingopyxis granuli sp. nov., a -glucosidase producing bacterium in the family Sphingomonadaceae in -4 subclass of the Proteobacteria. J. Microbiol. 43: 152-157 과학기술학회마을 |
9 | Mesbah, M., U. Premachandran, and W. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167 DOI |
10 | Shin, Y. K., J.-S. Lee, C. O. Chun, H.-J. Kim, and Y.-H. Park. 1996. Isoprenoid quinone profiles of the Leclercia adecarboxylata KTCT . J. Microbiol. Biotechnol. 6: 68-69 과학기술학회마을 |
11 | Widdel, F. and F. Bak. 1992. Gram-negative mesophilic sulfate reducing bacteria, pp. 3352-3378. In A. Balows, H. G. Truper, M. Dworkin, W. Harder, and K. H. Schleifer (eds.), The Prokaryotes, 2nd Ed. Springer, New York |
12 | Ten, L. N., W.-T. Im, M.-K. Kim, M.-S. Kang, and S.-T. Lee. 2004. Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J. Microbiol. Meth. 56: 375-382 DOI ScienceOn |
13 | Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge |
14 | Holmes, B., R. J. Owen, and R. E. Weaver. 1981. Flavobacterium multivorum, a new species isolated from human clinical specimens and previously known as group IIk, biotype 2. Int. J. Syst. Bacteriol. 31: 21-34 DOI |
15 | Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molec. Biol. Evol. 4: 406-425 |
16 | Wayne, L. G., D. J. Brenner, R. R. Colwell, et al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464 DOI |
17 | Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE: MIDI. U.S.A |
18 | Holmes, B., R. J. Owen, and D. G. Hollis. 1982. Flavobacterium spiritivorum, a new species isolated from human clinical specimens. Int. J. Syst. Bacteriol. 32: 157-165 DOI |
19 | Holmes, B., R. E. Weaver, A. G. Steigerwalt, and D. J. Brenner. 1988. A taxonomic study of Flavobacterium spiritivorum and Sphingobacterium mizutae: Proposal of Flavobacterium yabuuchiae sp. nov. and Flavobacterium mizutaii comb. nov. Int. J. Syst. Bacteriol. 38: 348-353 DOI |
20 | Takeuchi, M. and A. Yokota. 1992. Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., Sphingobacterium thalpophilum comb. nov., and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. J. Gen. Appl. Microbiol. 38: 465-482 DOI ScienceOn |
21 | Yeo, H. S., O. S. Lee, I. S. Lee, H. S. Kim, T. S. Yu, and Y. J. Jeong. 2004. Gluconacetobacter persimmonis sp. nov., isolated from Korean traditional persimmon vinegar. J. Microbiol. Biotechnol. 14: 276-283 |
22 | Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment briefings. Bioinformatics 5: 150-163 DOI ScienceOn |
23 | Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins. 1997. The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882 |
24 | Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791 DOI ScienceOn |
25 | Atlas, R. M. 1993. In L. C. Parks (ed.). Handbook of Microbiological Media. CRC Press, Boca Raton, Florida |
26 | Keswani, J. and W. B. Whitman. 2001. Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int. J. Syst. Evol. Microbiol. 51: 667-678 DOI |
27 | Kim, K.-H., L. N. Ten, Q.-M. Liu, W.-T. Im, and S.-T. Lee. 2006. Sphingobacterium daejeonense sp. nov., isolated from a compost sample. Int. J. Syst. Bacteriol. (in press) |
28 | Fitch, W. M. 1972. Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool. 20: 406-416 DOI ScienceOn |
29 | Steyn, P. L., P. Segers, M. Vancanneyt, P. Sandra, K. Kersters, and J. J. Joubert. 1998. Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov., and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int. J. Syst. Bacteriol. 48: 165-177 DOI ScienceOn |
30 | Widdel, F., G. W. Kohring, and F. Mayer. 1983. Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. 3. Characterization of filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov. Arch. Microbiol. 134: 286-294 DOI |
31 | Yabuuchi, E., T. Kaneko, I. Yano, C. W. Moss, and N. Miyoshi. 1983. Sphingobacterium gen. nov., Sphingobacterium spiritivorum comb. nov., Sphingobacterium multivorum comb. nov., Sphingobacterium mizutae sp. nov., and Flavobacterium indologenes sp. nov.: Glucose-nonfermenting gram-negative rods in CDC groups IIk-2 and IIb. Int. J. Syst. Bacteriol. 33: 580-598 DOI |
32 | Moore, D. D. 1995. Preparation and analysis of DNA, pp. 2-11. In F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (eds.), Current Protocols in Molecular Biology. Wiley, New York, U.S.A |
33 | Ten, L. N., W.-T. Im, M.-K. Kim, and S.-T. Lee. 2005. A plate assay for simultaneous screening of polysaccharide-and protein-degrading microorganisms. Lett. Appl. Microbiol. 40: 92-98 DOI ScienceOn |