Elucidation of Copper and Asparagine Transport Systems in Saccharomyces cerevisiae KNU5377 Through Genome-Wide Transcriptional Analysis |
KIM IL-SUP
(Department of Microbiology, School of Life Sciences and Biotechnology, Kyungpook National University)
YUN HAE SUN (Department of Microbiology, School of Life Sciences and Biotechnology, Kyungpook National University) SHIMISU HISAYO (International Patent Depositary, National Institute of Advanced Industrial Science and Technology) KITAGAWA EMIKO (Human Stress Signal Research Center, National Institute of Advanced Industrial Science and Technology) IWAHASHI HITOSHI (International Patent Depositary, Research Institute of Biological Resources, Human Stress Signal Research Center, National Institute of Advanced Industrial Science and Technology) JIN INGNYOL (Department of Microbiology, School of Life Sciences and Biotechnology, Kyungpook National University) |
1 | Birgitte R., S. Holmberg, L. D. Olsen, and M. C. Kielland- Brandt. 1998. Dip5p mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate in Saccharomyces cerevisiae. Curr. Genet. 33: 171-177 DOI ScienceOn |
2 | Church, G. M. and W. Gilbert. 1984. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81: 1991-1995 |
3 | Francisca, R. G., P. Sanz, and J. A. Prieto. 1999. Engineering baker's yeast: Room for improvement. Trends Biotechnol. 17: 237-244 DOI ScienceOn |
4 | Gross, C. and K. Watson. 1998. Application of mRNA differential display to investigate gene expression in thermotolerant cells of Saccharomyces cerevisiae. Yeast 14: 431-432 DOI ScienceOn |
5 | Kim, J. W., S. H. Kim, and I. N. Jin. 1995. The fermentation characteristics of Saccharomyces cerevisiae F38-1, a thermotolerant yeast isolated for fuel alcohol production at elevated temperature. Kor. J. Appl. Microbiol. Biotechnol. 23: 624-631 |
6 | Pascale, D. L., J. M. Daran, P. Kotter, T. Petit, M. D. W. Piper, and J. T. Pronk. 2003. Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK 113-7D using oligonucleotide microarrays. FEMS Yeast Res. 4: 259-269 DOI ScienceOn |
7 | Oh, K. S., S. K. Oh, Y. W. Oh, M. J. Sohn, S. G. Jung, Y. K. Kim, M. G. Kim, S. K. Rhee, G. Gellissen, and H. A. Kang. 2004. Fabrication of a partial genome microarray of the methylotrophic yeast Hansenula polymorpha: Optimization and evaluation of transcript profiling. J. Microbiol. Biotechnol. 14: 1239-1278 |
8 | Vishwanath, R. I., C. Gross, M. Kellehers, P. O. Brown, and D. R. Winge. 2000. Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays. J. Biol. Chem. 275: 32310-32316 DOI ScienceOn |
9 | Yun, H. S., S. K. Paik, I. S. Kim, I. N. Jin, and H. Y. Shon. 2004. Direct evidence of intracellular alkalinization in Saccharomyces cerevisiae KNU5377 exposed to inorganic acid. J. Microbiol. Biotechnol. 14: 243-249 |
10 | Bengt, L. P., J. O. Lagerstedt, J. R. Pratt, P. G. Johanna, K. Lundh, S. Shokrollahzadeh, and F. Lundh. 2003. Regulation of phosphate acquisition in Saccharomyces cerevisiae. Curr. Genet. 225: 225-244 |
11 | Kim, J. W., I. N. Jin, and J. H. Seu. 1995. Isolation of Saccharomyces cerevisiae F38-1, a thermotolerant yeast for fuel alcohol production at high temperature. Kor. J. Appl. Microbiol. Biotechnol. 23: 617-623 |
12 | Kosman, D. J. 2003. Molecular mechanisms of iron uptake in fungi. Mol. Microbiol. 47: 1185-1197 DOI PUBMED ScienceOn |
13 | Choowong, A., T. Homma, H. Tochio, M. Shirakawa, Y. Kaneko, and S. Harashima. 2004. Intracellular phosphate serves as a signal for the regulation of the PHO pathway in Saccharomyces cerevisiae. J. Biol. Chem. 279: 17289- 17294 DOI ScienceOn |
14 | Stefan, H. and W. H. Mager. 2003. Yeast Stress Response, pp. 201-240. 2nd Ed. Springer-Verlag Berlin Heidelberg, New York, U.S.A |
15 | Gasch, A. P. 2002. Yeast genomic expression studies using DNA microarrays. Methods Enzymol. 350: 393-414 DOI |
16 | Maria, M. P., S. Puig, and D. J. Thiele. 2000. Characterization of the Saccharomyces cerevisiae high affinity copper transporter Ctr3. J. Biol. Chem. 275: 33244-33251 DOI ScienceOn |
17 | Gasch, A. P. and M. Werner-Washburne. 2002. The genomics of yeast responses to environmental stress and starvation. Funct. Integr. Genomics 2: 181-192 DOI ScienceOn |
18 | Lim, Y. S., S. M. Bae, and K. Kim. 2005. Mass production of yeast spores from compressed yeast. J. Microbiol. Biotechnol. 15: 568-572 |
19 | Strathern, J. N., E. W. Jones, and J. R. Bioach. 1982. The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, pp. 399-461. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, U.S.A |
20 | Oshima, Y. 1997. The phosphatase system in Saccharomyces cerevisiae. Genes Genet. Syst. 72: 323-334 DOI PUBMED ScienceOn |
21 | Frank, C. P. H., E. G. Jennings, J. J. Wyrick, T. I. Lee, C. J. Hengartner, M. R. Green, T. R. Golub, E. S. Lander, and R. A. Young. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728 DOI ScienceOn |
22 | Helen, C. C., B. Ren, S. S. Koh, C. T. Harbison, E. Kanin, E. G. Jennings, T. I. Lee, H. L. True, E. S. Lander, and R. A. Young. 2001. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell. 12: 323-337 DOI |
23 | Audrey, P. G., P. T. Spellman, C. M. Kao, C. H. Orna, M. B. Eisen, G. Storz, D. Botstein, and P. O. Brown. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell. 11: 4241-4257 DOI |
24 | David, G., T. Rushmore, and C. T. Caskey. 1999. DNA chips: Promising toys have become powerful tools. Trends Biochem. Sci. 24: 168-173 DOI PUBMED ScienceOn |
25 | Gross, C. and K. Watson. 1996. Heat shock protein synthesis and trehalose accumulation are not required for induced thermotolerance in depressed Saccharomyces cerevisiae. Biochem. Biophys. Comm. 220: 766-772 DOI ScienceOn |
26 | Paik, S. K., H. S. Yun, H. Y. Sohn, and I. N. Jin. 2003. Effect of trehalose accumulation on the intrinsic and acquired thermotolerance in a natural isolate, Saccharomyces cerevisiae KNU5377. J. Microbiol. Biotechnol. 13: 85-89 |
27 | Yun, H. S., S. K. Paik, I. S. Kim, I. K. Rhee, C. B. Yu, and I. Y. Jin. 2003. Stress response of a thermotolerant alcoholfermenting yeast strain, Saccahromyces cerevisiae KNU5377, against inorganic acids and its alcohol fermentation productivity under the presence of these acids. Kor. J. Life Sci. 13: 110-117 DOI |
28 | Schmitt, M. E., T. A. Brown, and B. L. Trumpower. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 18: 3091-3092 DOI ScienceOn |
29 | Heo, S. Y., J. K. Kim, Y. M. Kim, and S. W. Nam. 2004. Xylan hydrolysis by treatment with endoxylanase and - xylosidase expressed in yeast. J. Microbiol. Biotechnol. 14: 171-177 |