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Purification and Characterization of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase from Comamonas sp. SMN4  

Lee, Na-Ri (Department of Biological Science, Sookmyung Women's University, Korea Food Research Institute)
Lee, Jang-Mi (Department of Biological Science, Sookmyung Women's University)
Min, Kyung-Hee (Department of Biological Science, Sookmyung Women′s University)
Kwon, Dae-Young (Korea Food Research Institute)
Publication Information
Journal of Microbiology and Biotechnology / v.13, no.4, 2003 , pp. 487-494 More about this Journal
Abstract
2,3-Dihydroxybiphenyl 1,2-dioxygenase (23DBDO), an enzyme of the biphenyl biodegradation pathway encoded by the bphC gene of Comnmonas sp. SMN4, was expressed and purified using column chromatographies. SDS-PAGE of purified 23DBDO showed a single band with a molecular mass of 32 kDa, which was consistent with the data from the gel filtration chromatography (GFC). The purified enzyme exhibited a maximum 23DBDO activity at pH 9.0 and was stable at pH 8.0. The enzyme showed maximum activity at $40^{\circ}C$ and maintained activity at $30^{\circ}C$ for 24 h. Kinetic parameters represented by Michaelis-Menten constants such as $K_m\;and\;V_{max}$ values for various substrates were determined by Lineweaver-Burk plots: The purified enzyme 23DBDO from Comamonas sp. SMN4 had the highest catalytic activity for 2,3-dihydroxybiphenyl and 3-methylcatechol, and had very poor activity with catechol and 4-methylcatechol.
Keywords
Dihydroxybiphenyl dioxygenase; bphC; Comamonas; biphenyl degradation; binding affinity; substrate specificity;
Citations & Related Records
Times Cited By KSCI : 7  (Citation Analysis)
Times Cited By Web Of Science : 3  (Related Records In Web of Science)
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[ Lee,N.R.;D.Y.Kwon;K.H.Min ] / J. Ind. Microbiol. Biotechnol.
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[ Kimbara,K.;T.Hashimoto;M.Fukuda;T.Koana;M.Takagi;M.Oishi;K.Yano ] / J. Bacteriol.
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[ Ahmed,M.;D.D.Focht ] / Can. J. Microbiol.   DOI   ScienceOn
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[ Kim,E.;I.Ahn;L.W.Lion;M.L.Shuler ] / J. Microbiol. Biotechnol.   과학기술학회마을
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[ Chung,N.;G.Kang;G.H.Kim;I.S.Lee;W.G.Bang ] / Phanerochaete chrysosporium. J. Microbiol. Biotechnol.   과학기술학회마을
6 Common induction and regulation of biphenyl, xylene/toluene, and salicylate catabolism in Pseudomonas paucimobilis /
[ Furukawa,K.;J.R.Simon;A.M.Chakrabarty ] / J. Bacteriol.
7 Identification of an alternate 2,3-dihydroxybiphenyl ,2-dioxygenase in Rhodococcus sp. strain RHA1 and cloning of the gene /
[ Hauschild,J.;E.Masai;K.Sugiyama;T.Hatta;K.Kimbara;M.Fukuda;K.Yano ] / Appl. Environ. Microbiol.
8 /
[ Bollag,D.M.;M.K.Rozycki;S.J.Edelstein ] / Protein Methods. (2nd ed.)
9 Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation /
[ Mondello,F.J. ] / J. Bacteriol.
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[ Elus,L.D.;B.Hofmann;H.J.Hecht;H.Lunsdorf;K.N.Timmis ] / J. Biol. Chem.
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[ Laemmli,U.K. ] / Nature   DOI   ScienceOn
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[ Senda,T.;S.Kazuyuki;H.Narita;T.Yamamoto;K.Kimbara;M.Fukuda;M.Sato;K.Yano;Y.Misui ] / J. Mol. Biol.   DOI   ScienceOn
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[ Bergeron,J.;D.Ahmad;D.Barriault;A.Larose;M.Sylvestre ] / Can. J. Microbiol.   DOI   ScienceOn
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[ Van der Meer;J.R.;W.M. de Vos;S.Harayama;A.J.B.Zehnder ] / Microbiol. Rec.
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[ Asturias,J.A.;L.D.Eltis;M.Prucha;K.N.Timmis ] / J. Biol. Chem.
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[ Furukawa,K.;T.Miyazaki ] / J. Bacteriol.
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[ Ha,Y.M.;H.Jung;D.Y.Kwon;Y.C.Kim;Y.Kim;C.K.Kim;K.H.Min ] / J. Microbiol. Biotechnol.   과학기술학회마을
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[ Han,S.;L.D.Eltis;K.N.Timmis;S.W.Muchmore;J.T.Bolin ] / Science   DOI
19 Protein measurement with the Folin phenol reagent /
[ Lowry,O.H.;N.J.Rosebrough;A.L.Farr;R.J.Randall ] / J. Biol. Chem.
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[ Oh,K.B.;W.Mar;I.M.Chang ] / J. Microbiol. Biotechnol.   과학기술학회마을
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[ Taira,K.;J.Hirose;S.Hayashida;K.Furukawa ] / J. Biol. Chem.
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