Molecular Markers for Detecting a Wide Range of Trichoderma spp. that Might Potentially Cause Green Mold in Pleurotus eryngii |
Lee, Song Hee
(Department of Mushroom Science, Korea National College of Agriculture and Fisheries)
Jung, Hwa Jin (Department of Mushroom Science, Korea National College of Agriculture and Fisheries) Hong, Seung-Beom (Korean Agricultural Culture Collection, Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Choi, Jong In (Mushroom Research Institute, GARES) Ryu, Jae-San (Department of Mushroom Science, Korea National College of Agriculture and Fisheries) |
1 | Mleczek M, Siwulski M, Rzymski P, et al. Cultivation of mushrooms for production of food biofortified with lithium. Eur Food Res Technol. 2017;243(6):1097-1104. DOI |
2 | Estrada AR, Royse DJ. Yield, size and bacterial blotch resistance of Pleurotus eryngii grown on cottonseed hulls/oak sawdust supplemented with manganese, copper and whole ground soybean. Bioresour Technol. 2007;98(10):1898-1906. DOI |
3 | Jin X, Wang Q, Yang X, et al. Chemical characterisation and hypolipidaemic effects of two purified Pleurotus eryngii polysaccharides. Int J Food Sci Technol. 2018;53(10):2298-2307. DOI |
4 | Ma G, Kimatu BM, Zhao L, et al. Impacts of dietary Pleurotus eryngii polysaccharide on nutrient digestion, metabolism, and immune response of the small intestine and colon - an iTRAQ-based proteomic analysis. Proteomics. 2018;18(7):1700443. DOI |
5 | Lee SH, Kim MK, Ryu JS, et al. Characteristics of a new Pleurotus eryngii cultivar, Aeryni 6. J Mushroom. 2018;16(1):16-21. DOI |
6 | Jang MJ, Park Y, Kim JH. Properties of disease occurrence by season for cultivation facilities of oyster mushroom. J Mushroom Sci. 2019;17(3):93-98. |
7 | Sobiralski K, Siwulski M, Gorski R, et al. Impact of Trichoderma aggressivum f. europaeum isolates on yielding and morphological features of Pleurotus eryngii. Pytopathologia. 2010;56:17-25. |
8 | Hatvani L, Antal L, Manczinger L, et al. Green mold diseases of Agaricus and Pleurotus spp. are caused by related but phylogenetically different Trichoderma species. Phytopathology. 2007;97(4):532-537. DOI |
9 | Komon-Zelazowska M, Bissett J, Zafari D, et al. Genetically closely related but phenotypically divergent Trichoderma species cause green mold disease in oyster mushroom farms worldwide. Appl Environ Microbiol. 2007;73(22):7415-7426. DOI |
10 | Kredics L, Kocsube S, Nagy L, et al. Molecular identification of Trichoderma species associated with Pleurotus ostreatus and natural substrates of the oyster mushroom. FEMS Microbiol Lett. 2009;300(1):58-67. DOI |
11 | Park MS, Bae KS, Yu SH. The new species of Trichoderma associated with green mold of oyster mushroom cultivation in Korea. Mycobiology. 2006;34(3):11-13. |
12 | Sobieralski K, Siwulski M, Komon-Zelazowska M, et al. Evaluation of the growth of Trichoderma pleurotum and Trichoderma pleuroticola isolates and their biotic interaction with Pleurotus sp. J Plant Protect Res. 2012;52(2):235-239. DOI |
13 | Harman GE, Howell CR, Viterbo A, et al. Trichoderma species-opportunistic, avirulent plant symbionts. Nat Rev Microbiol. 2004;2(1):43-56. DOI |
14 | Wellings CR, McIntosh RA, Walker J. Puccinia striiformis f. sp. tritici in Eastern Australia -possible means of entry and implications for plant quarantine. Plant Pathol. 1987;36(3):239-241. DOI |
15 | Park B, Ha BS, Lee SH, et al. Variable-number tandem repeat loci-discriminating Pleurotus ostreatus cultivars. Mycoscience. 2019;60(2):132-135. DOI |
16 | White TJ, Brunes T, Taylor JW. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Sninsky J, et al., editors. PCR protocols: a guide to methods and applications. Cambridge, MA: Academic Press; 1990. p. 315-322. |
17 | Dees PM, Ghiorse WC. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol Ecol. 2001;35(2):207-216. DOI |
18 | Lee SH, Ali A, Ha B, et al. Development of a molecular marker linked to the A4 locus and the structure of HD genes in Pleurotus eryngii. Mycobiology. 2019;47(2):200-206. DOI |
19 | Druzhinina IS, Kopchinskiy AG, Komon M, et al. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genet Biol. 2005;42(10):813-828. DOI |
20 | Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA. 1977;74(12):5463-5467. DOI |
21 | Kopchinskiy A, Komon M, Kubicek CP, et al. TrichoBLAST: a multilocus database for Trichoderma and Hypocrea identifications. Mycol Res. 2005;109(Part 6):658-660. DOI |
22 | Ryu JS, Kim MK, Im CH, et al. Development of cultivation media for extending the shelf-life and improving yield of king oyster mushrooms (Pleurotus eryngii). Sci Hortic. 2015;193:121-126. DOI |
23 | Team RDC. R: a language and environment for statistical computing. Vienna, Austria: R foundation for statistical computing; 2013. Available from: http://www.R-project.org. |
24 | Thompson JD, Gibson TJ, Higgins DG. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics. 2002;Chapter 2:Unit 2.3. |
25 | Kalendar R, Lee D, Schulman AH. FastPCR software for PCR, in silico PCR, and oligonucleotide assembly and analysis. In: Valla S, Lale R, editors. DNA cloning and assembly methods, Methods in Molecular Biology. Totowa, NJ: Humana Press; 2014. p. 271-302. |
26 | Williams J, Clarkson JM, Mills PR, et al. Saprotrophic and mycoparasitic components of aggressiveness of Trichoderma harzianum groups toward the commercial mushroom Agaricus bisporus. Appl Environ Microbiol. 2003;69(7):4192-4199. DOI |
27 | Choi I-Y, Joung G-T, Ryu J, et al. Physiological characteristics of green mold (Trichoderma spp.) isolated from Oyster Mushroom (Pleurotus spp). Mycobiology. 2003;31(3):139-144. DOI |
28 | Kim SW, Kim S, Lee HJ, et al. Isolation of fungal pathogens to an edible mushroom, Pleurotus eryngii, and development of specific ITS primers. Mycobiology. 2013;41(4):252-255. DOI |
29 | Samuels GJ, Dodd SL, Gams W, et al. Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia. 2002;94(1):146-170. DOI |
30 | Miyazaki K, Tsuchiya Y, Okuda T. Specific PCR assays for the detection of Trichoderma harzianum causing green mold disease during mushroom cultivation. Mycoscience. 2009;50(2):94-99. DOI |
31 | Janpoor J, Pourianfar HR, Shahtahmasebi S. Study on effect of culture medium and growth conditions on liquid spawn king oyster mushroom (Pleurotus eryngii). Int J Farm Allied Sci. 2017;6(6):154-156. |
32 | Lee SJ, Kim HH, Kim SH, et al. Culture conditions of liquid spawn and the growth characteristics of Pleurotus ostreatus. J Mushroom. 2018;16(3):162-170. DOI |