Delimitation of Russula Subgenus Amoenula in Korea Using Three Molecular Markers |
Park, Myung Soo
(School of Biological Sciences, Seoul National University)
Fong, Jonathan J. (School of Biological Sciences, Seoul National University) Lee, Hyun (School of Biological Sciences, Seoul National University) Oh, Seung-Yoon (School of Biological Sciences, Seoul National University) Jung, Paul Eunil (School of Biological Sciences, Seoul National University) Min, Young Ju (School of Biological Sciences, Seoul National University) Seok, Soon Ja (Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration) Lim, Young Woon (School of Biological Sciences, Seoul National University) |
1 | Rambaut A, Drummond A. Tracer v1.5 Andrew Rambaut; 2007 [cited 2013 Aug 8]. Available from: http://tree.bio.ed.ac.uk/ software/tracer/.2009. |
2 | Maddison WP, Maddison DR. MacClade: analysis of phylogeny and character evolution. Sunderland: Sinauer Associates; 2000. |
3 | Bills GF, Miller OK Jr. Southern Appalachian Russulas. I. Mycologia 1984;76:975-1002. DOI |
4 | Romagnesi H. Les russules d'Europe et d'Afrique du Nord. Paris: Bordas; 1985. |
5 | Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980;16:111-20. DOI ScienceOn |
6 | Jung HS. Fungal flora of Ullung Island (IV): on some agaric fungi. Kor J Mycol 1993;21:64-72. |
7 | Kleine CS, McClean T, Miller SL. Genetic divergence among disjunct populations of three Russula spp. from Africa and Madagascar. Mycologia 2013;105:80-9. DOI ScienceOn |
8 | Casiraghi M, Labra M, Ferri E, Galimberti A, De Mattia F. DNA barcoding: a six-question tour to improve users' awareness about the method. Brief Bioinform 2010;11:440-53. DOI ScienceOn |
9 | Shimono Y, Kato M, Takamatsu S. Molecular phylogeny of Russulaceae (Basidiomycetes; Russulales) inferred from the nucleotide sequences of nuclear large subunit rDNA. Mycoscience 2004;45:303-16. DOI ScienceOn |
10 | Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W; Fungal Barcoding Consortium; Fungal Barcoding Consortium Author List. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proc Natl Acad Sci U S A 2012; 109:6241-6. DOI ScienceOn |
11 | Lee TS. The full list of recorded mushrooms in Korea. Kor J Mycol 1990;18:233-59. |
12 | National Institue of Biological Resources. Molecular phylogeny of Korean major taxa (NIBR No. 11-1480592-000415-01). Incheon: NIBR; 2012. |
13 | Kranzlin F. Fungi of Switzerland. Vol. 6. Russulaceae: Lactarius, Russula. Lucerne: Verlag Mykologia; 2005. |
14 | Rogers SO, Bendich AJ. Extraction of total cellular DNA from plants, algae and fungi. In: Gelvin SB, Schilperoort RA, editors. Plant molecular biology manual D1. Dordrecht: Springer; 1994. p. 1-8. |
15 | White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York: Academic Press, Inc.; 1990. p. 315-22. |
16 | Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 1990;172:4238-46. DOI |
17 | Chun J. Computer assisted classification and identification of actinomycetes. Newcastle upon Tyne: University of Newcastle; 1995. |
18 | Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 2012; 61:539-42. DOI ScienceOn |
19 | Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 2005;33:511-8. DOI ScienceOn |
20 | Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 2012;9:772. |
21 | Buyck B, Thoen D, Watling R. Ectomycorrhizal fungi of the Guinea-Congo region. Proc R Soc Edinb B Biol Sci 1996; 104:313-33. |
22 | Gardes M, Dahlberg A. Mycorrhizal diversity in arctic and alpine tundra: an open question. New Phytol 1996;133:147-57. DOI ScienceOn |
23 | Yamashita S, Hijii N. The role of fungal taxa and developmental stage of mushrooms in determining the composition of the mycophagous insect community in a Japanese forest. Eur J Entomol 2007;104:225-33. DOI |
24 | Hu L, Zeng L. Investigation on wild edible mushroom resources in Wanxian Country, Sichuan Province. Zhongguo Shiyongjun 1992;11:35-7. |
25 | Miller SL, Buyck B. Molecular phylogeny of the genus Russula in Europe with a comparison of modern infrageneric classifications. Mycol Res 2002;106:259-76. DOI ScienceOn |
26 | Kirk PM, Cannon PF, Minter DW, Stalpers JA. Dictionary of the fungi. Wallingford: CAB International; 2008. |
27 | Sarnari M. Monografia illustrata del genere Russula in Europa. Trento: Associazione Micologica Bresadola; 1998. |
28 | Das K, Miller SL, Sharma JR, Sharma P, Bhatt RP. Russula in Himalaya 1: a new species of subgenus Amoenula. Mycotaxon 2005;94:85-8. |
29 | Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731-9. DOI ScienceOn |
30 | Matheny PB. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol Phylogenet Evol 2005;35:1-20. DOI ScienceOn |