Browse > Article
http://dx.doi.org/10.5941/MYCO.2012.40.3.151

Diversity of Culturable Soil Micro-fungi along Altitudinal Gradients of Eastern Himalayas  

Devi, Lamabam Sophiya (Microbiology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University)
Khaund, Polashree (Microbiology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University)
Nongkhlaw, Fenella M.W. (Microbiology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University)
Joshi, S.R. (Microbiology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University)
Publication Information
Mycobiology / v.40, no.3, 2012 , pp. 151-158 More about this Journal
Abstract
Very few studies have addressed the phylogenetic diversity of fungi from Northeast India under the Eastern Himalayan range. In the present study, an attempt has been made to study the phylogenetic diversity of culturable soil fungi along the altitudinal gradients of eastern Himalayas. Soil samples from 24 m above sea level to 2,000 m above sea level altitudes of North-East India were collected to investigate soil micro-fungal community structure and diversity. Molecular characterization of the isolates was done by PCR amplification of 18S rDNA using universal primers. Phylogenetic analysis using BLAST revealed variation in the distribution and richness of different fungal biodiversity over a wide range of altitudes. A total of 107 isolates were characterized belonging to the phyla Ascomycota and Zygomycota, corresponding to seven orders (Eurotiales, Hypocreales, Calosphaeriales, Capnodiales, Pleosporales, Mucorales, and Mortierellales) and Incertae sedis. The characterized isolates were analysed for richness, evenness and diversity indices. Fungal diversity had significant correlation with soil physico-chemical parameters and the altitude. Eurotiales and Hypocreales were most diverse and abundant group of fungi along the entire altitudinal stretch. Species of Penicillium (D=1.44) and Aspergillus (D=1.288) were found to have highest diversity index followed by Talaromyces (D=1.26) and Fusarium (D=1.26). Fungal distribution showed negative correlation with altitude and soil moisture content. Soil temperature, pH, humidity and ambient temperature showed positive correlation with fungal distribution.
Keywords
Altitude; Diversity indices; Microfungal diversity; Richness; 18S rDNA;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Zak JC, Visser S. An appraisal of soil fungal biodiversity: the crossroads between taxonomic and functional biodiversity. Biodivers Conserv 1996;5:169-83.   DOI   ScienceOn
2 Schlesinger WH. Biogeochemistry: an analysis of global change. 2nd ed. San Diego: Academic Press; 1997. p. 3-15.
3 Zhang Q, Zak JC. Potential physiological activities of fungi and bacteria in relation to plant litter decomposition along a gap size gradient in a natural subtropical forest. Microb Ecol 1998;35:172-9.   DOI   ScienceOn
4 Hobbie EA, Macko SA, Shugart HH. Insights into nitrogen and carbon dynamics of ectomycorrhizal and saprotrophic fungi from isotopic evidence. Oecologia 1999;118:353-60.   DOI   ScienceOn
5 Trevors JT. Bacterial biodiversity in soil with an emphasis on chemically-contaminated soils. Water Air Soil Pollut 1998; 10:45-67.
6 Gleason FH, Letcher PM, McGee PA. Some Chytridiomycota in soil recover from drying and high temperatures. Mycol Res 2004;108:583-9.   DOI   ScienceOn
7 Manoharachary C, Sridhar K, Singh R, Adholeya A, Suryanarayanan TS, Rawat S, Johri BN. Fungal biodiversity: distribution, conservation and prospecting of fungi from India. Curr Sci 2005;89:58-71.
8 Petersen RH, Hughes KW. Species and speciation in mushrooms: development of a species concept poses difficulties. BioScience 1999;49:440-52.   DOI   ScienceOn
9 Burnett J. Fungal populations and species. Oxford: Oxford University Press; 2003.
10 Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 2000;31:21-32.   DOI   ScienceOn
11 Myers N, Mittermeier RA, Mittermeier CG, de Fonseca GA, Kent J. Biodiversity hotspots for conservation priorities. Nature 2000;403:853-8.   DOI   ScienceOn
12 Ramakantha V, Gupta AK, Kumar A. Biodiversity of Northeast India: an overview. Envis Bull 2003;4:1-24.
13 Rao RR. Biodiversity. In: Singh B, Singh MP, editors. India (floristic aspects). India; 1994. p. 315.
14 Shannon CE, Weaver W. The mathematical theory of communication. Urbana: University of Illinois Press; 1949.
15 Chatterjee S, Saikia A, Dutta P, Ghosh D, Pangging G, Goswami AK. Background paper on biodiversity significance of North East India for the study on natural resources, water and environment nexus for development and growth in North Eastern India. In: Forest Conservation Programme, 2006 WWF-India; 2006 Jun 30; New Delhi, India.
16 Borneman J, Hartin RJ. PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 2000;66:4356-60.   DOI   ScienceOn
17 Karaolis DK. Method for direct detection of fungal pathogens [Internet]. United States Patent; 2007 [cited 2010 Nov 2]. Available from: http://www.freepatentsonline.com/7291465.html.
18 Jost L. Entropy and diversity. Oikos 2006;113:363-75.   DOI   ScienceOn
19 Simpson EH. Measurement of diversity. Nature 1949;163:688.   DOI
20 Pielou EC. The measurement of diversity in different types of biological collections. J Theor Biol 1966;13:131-44.   DOI
21 Zar JH. Biostatistical analysis. Upper Saddle River: Prentice Hall; 1984.
22 Song FQ, Tian XJ, Li ZQ, Yang CL, Chen B, Hao JJ, Zhu J. Diversity of filamentous fungi in organic layers of two forests in Zijin Mountain. J For Res 2004;15:273-9.   DOI   ScienceOn
23 Bissett J, Parkinson D. Fungal community structure in some alpine soils. Can J Bot 1979;57:1630-41.   DOI
24 Osono T, Hirose D. Altitudinal distribution of microfungi associated with Betula ermanii leaf litter on Mt. Rishiri, northern Japan. Can J Microbiol 2009;55:783-9.   DOI   ScienceOn
25 Bissett J, Parkinson D. Functional relationships between soil fungi and environment in alpine tundra. Can J Bot 1979;57: 1642-59.   DOI
26 Devi SL, Khaund P, Joshi SR. Thermostable ${\alpha}$-amylase from natural variants of Bacillus spp. prevalent in eastern Himalayan range. Afr J Microbiol Res 2010;4:2534-42.
27 Joshi SR, Chauhan M, Sharma GD, Mishra RR. Effect of deforestation on microbes, VAM fungi and their enzymatic activity in Eastern Himalaya. In: Rajwas GS, editor. Studies in Himalayan ecobiology. New Delhi: Today and Tomorrows Publication; 1991. p. 141-52.
28 Joshi SR, Kumar R, Saikia P, Bhagobaty RK, Thokchom S. Impact of roadside pollution on microbial activities in subtropical forest soil of North East India. Res J Environ Sci 2010;4:280-7.   DOI
29 Revenga C, Kura Y. Status and trends of biodiversity of inland water ecosystems. Technical series no. 11. Montreal: Secretariat of the Convention on Biological Diversity; 2003.
30 Devi LS, Joshi SR. Antimicrobial and synergistic effects of silver nanoparticles synthesized using soil fungi of high altitudes of eastern Himalaya. Mycobiology 2012;40:27-34.   DOI