Browse > Article
http://dx.doi.org/10.4489/MYCO.2010.38.1.017

Cultural Conditions for Mycelial Growth and Molecular Phylogenetic Relationship in Different Wild Strains of Schizophyllum commune  

Alam, Nuhu (Department of Biology, University of Incheon)
Cha, Youn-Jeong (Department of Biology, University of Incheon)
Shim, Mi-Ja (Department of Life Science, University of Seoul)
Lee, Tae-Soo (Department of Biology, University of Incheon)
Lee, U-Youn (Department of Biology, University of Incheon)
Publication Information
Mycobiology / v.38, no.1, 2010 , pp. 17-25 More about this Journal
Abstract
The common split-gilled mushroom, Schizophyllum commune is found throughout the world on woody plants. This study was initiated to evaluate conditions for favorable vegetative growth and to determine molecular phylogenetic relationship in twelve different strains of S. commune. A suitable temperature for mycelial growth was obtained at $30^{\circ}C$. This mushroom grew well in acidic conditions and pH 5 was the most favorable. Hamada, glucose peptone, Hennerberg, potato dextrose agar and yeast malt extract were favorable media for growing mycelia, while Lilly and glucose tryptone were unfavorable. Dextrin was the best and lactose was the less effective carbon source. The most suitable nitrogen sources were calcium nitrate, glycine, and potassium nitrate, whereas ammonium phosphate and histidine were the least effective for the mycelial growth of S. commune. The genetic diversity of each strain was investigated in order to identify them. The internal transcribed spacer (ITS) regions of rDNA were amplified using PCR. The size of the ITS1 and ITS2 regions of rDNA from the different strains varied from 129 to 143 bp and 241 to 243 bp, respectively. The sequence of ITS1 was more variable than that of ITS2, while the 5.8S sequences were identical. A phylogenetic tree of the ITS region sequences indicated that the selected strains were classified into three clusters. The reciprocal homologies of the ITS region sequences ranged from 99 to 100%. The strains were also analyzed by random amplification of polymorphic DNA (RAPD) with 20 arbitrary primers. Twelve primers efficiently amplified the genomic DNA. The number of amplified bands varied depending on the primers used or the strains tested. The average number of polymorphic bands observed per primer was 4.5. The size of polymorphic fragments was obtained in the range of 0.2 to 2.3 kb. These results indicate that the RAPD technique is well suited for detecting the genetic diversity in the S. commune strains tested.
Keywords
ITS; Mycelial growth; Physicochemical; RAPD; rDNA; Schizophyllum commune;
Citations & Related Records
Times Cited By KSCI : 5  (Citation Analysis)
연도 인용수 순위
1 Cooke WB. The genus Schizophyllum. Mycologia 1961;53: 575-99.   DOI
2 Rihs JD, Padhye AA, Good CB. Brain abscess caused by Schizophyllum commune: an emerging basidiomycete pathogen. J Clin Microbiol 1996;34:1628-32.
3 Casselton LA, Olesnicky NS. Molecular genetics of mating recognition in basidiomycete fungi. Microbiol Mol Biol Rev 1998;62:55-70.
4 Clark TA, Anderson JB. Dikaryons of the basidiomycete fungus Schizophyllum commune: evolution in long-term culture. Genetics 2004;167:1663-75.   DOI   ScienceOn
5 Yang FC, Liau CB. Effects of cultivating conditions on the mycelial growth of Ganoderma lucidum in submerged flask cultures. Bioprocess Eng 1998;19:233-6.
6 Raper CA. Schizophyllum commune, a model for genetic studies of the Basidiomycotina. In: Sidhu GS, editor. Genetics of plant pathogenic fungi. London: Academic Press; 1988. p. 511-22.
7 Paul B. ITS region of the rDNA of Pythium longandrum, a new species: its taxonomy and its comparison with related species. FEMS Microbiol Lett 2001;202:239-42.   DOI
8 Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 1990;18:6531-5.   DOI
9 Shim JO, Son SG, Kim YH, Lee YS, Lee JY, Lee TS, et al. The cultural conditions affecting the mycelial growth of Grifola umbellata. Kor J Mycol 1997;25:209-18.   과학기술학회마을
10 Lopandic K, Molnar O, Prillinger H. Application of ITS sequence analysis, RAPD and AFLP fingerprinting in characterising the yeast genus Fellomyces. Microbiol Res 2005;160: 13-26.   DOI   ScienceOn
11 Alam N, Shim MJ, Lee MW, Shin PG, Yoo YB, Lee TS. Vegetative growth and Phylogenetic relationship of commercially cultivated strains of Pleurotus eryngii based on ITS sequence and RAPD. Mycobiology 2009;37:258-66.   과학기술학회마을   DOI   ScienceOn
12 Sung JM, Kim CH, Yang KJ, Lee HK, Kim YS. Studies on distribution and utilization of Cordyceps militaris and C. nutans. Kor J Mycol 1993;21:94-105.   과학기술학회마을
13 Lee SB, Taylor JW. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ. editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press; 1990. p. 282-7.
14 Nei M, Li WH. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 1979;76:5269-73.   DOI   ScienceOn
15 Cubero OF, Crespo A, Fatehi J, Bridge PD. DNA extraction and PCR amplification method suitable for fresh, herbarium stored, lichenized and other fungi. Plant Syst Evol 1999;216: 243-9.   DOI   ScienceOn
16 Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985;39:783-91.   DOI   ScienceOn
17 Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 1987;4: 406-25.
18 Shim SM, Oh YH, Lee KR, Kim SH, Im KH, Kim JW, et al. The characteristics of cultural conditions for the mycelial growth of Macrolepiota procera. Mycobiology 2005;33:15-8.   과학기술학회마을   DOI
19 Alam N, Jaysinghe C, Cha YJ, Kim JH, Lee TS. Screening of suitable conditions for mycelial growth of wild strains of Pholiota adiposa. Bull Life Environ Sci 2008; 2:105-12.
20 Shim SM, Lee KR, Kim SH, Im KH, Kim JW, Lee UY, et al. The optimal culture conditions affecting the mycelial growth and fruiting body formation of Paecilomyces fumosoroseus, Mycobiology 2003;31:214-20.   DOI
21 Adejoye OD, Adebayo-Tayo BC, Ogunjobi AA, Afolabi OO. Physicochemical studies on Schizophyllum commune (Fries) a Nigerian edible fungus. World Appl Sci J 2007;2:73-6.
22 James TY, Moncalvo JM, Li S, Vilgalys R. Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics 2001;157:149-61.
23 White TJ, Bruns T, Lee S, Taylor JW. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press; 1990. p. 315-22.
24 Zervakis GI, Venturella G, Papadopoulou K. Genetic polymorphism and taxonomic infrastructure of the Pleurotus eryngii species-complex as determined by RAPD analysis, isozyme profiles and ecomorphological characters. Microbiolology 2001;147:3183-94.
25 Thompson JD, Higgins DG, Gibson TJ. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-80.   DOI