Comparison of RAPD, AFLP, and EF -1 α Sequences for the Phylogenetic Analysis of Fusarium oxysporum and Its formae speciales in Korea |
Park, Jae-Min
(Department of Microbiology, Pusan National University)
Kim, Gi-Young (School of Applied Marine Science, College of Ocean Science, Cheju National University) Lee, Song-Jin (Department of Microbiology, Pusan National University) Kim, Mun-Ok (Department of Microbiology, Pusan National University) Huh, Man-Kyu (Department of Molecular Biology, Dong-Eui University) Lee, Tae-Ho (Department of Microbiology, College of Natural Sciences, Pusan National University) Lee, Jae-Dong (Department of Microbiology, Pusan National University) |
1 | Venter, S. L. and Steyn, P. J. 1998. Correlation between fusaric acid production and virulence of isolates of Fusarium oxysporum that causes potato dry rot in South Africa. Potato Res. 41: 289-294 DOI ScienceOn |
2 | Voigt, K., Schleier, S. and Brckner, B. 1995. Genetic variability in Gibberella jujikuroi and some related species of the genus Fusarium based on random amplification of polymorphic DNA (RAPD). Curr. Genet. 27: 528-535 DOI |
3 | White, T., Bums, J., Lee, S. and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp 315-322. In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. and White, T. J. Eds. PCR Protocol: A Guide to Methods and Applications. Academic Press, Inc., New York |
4 | Withanage, G. S., Murata, H., Koyama, T. and Ishiwata, I. 2001. Agonistic and antagonistic effects of zearalenone, an estrogenic mycotoxin, on SKN, HHUA, and HepG2 human cancer cell lines. Vet. Hum. Toxicol. 43: 6-10 |
5 | Yeh, F. C., Yang, R. C. and Boyle, T. 1999. POPGEN Ver.1.31, Microsoft window-based freeware for population genetic analysis, Edmonton, Canada |
6 | Yli-Mattila, T., Paavanen, S., Hannukkala, A., Parikka, P., Tahvonen, R. and Karjalainen, R. 1996. Isozyme and RAPD-PCR analyses of Fusarium avenaceum strains from Finland. Plant Pathol. 45: 126-134 DOI |
7 | Zeller, K. A., Jurgenson, J. A., El-Assiuty, E. M. and Leslie, J. F. 2000. Isozyme and amplified fragment length polymorphims (AFLPs) from Cephalosporium maydis in Egypt. Phytoparasitica 28: 121-130 DOI |
8 | O'Donnell, K. 2000. Molecular phylogeny of the Nectria haematococcaFusarium solani species complex. Mycologia 92: 919- 938 DOI |
9 | Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A. and Tingey, S. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18: 6531-6535 DOI |
10 | Snyder, W. C. and Hansen, H. N. 1945 The species concept in Fusarium with reference to discolor and other species. Am. J. Bot. 28: 738-742 DOI ScienceOn |
11 | Gonzalez, M., Rodriguez, M. E. Z., Jacabo, J. L., Hernandez, F. J., Acosta, O. and Simpson, J. 1998. Characterization of Mexican isolates of Colletotrichum lindemuthianum by using differential cultivars and molecular markers. Phytopathology 88: 292-299 DOI ScienceOn |
12 | Smouse, P. E., Long, J. C. and Sokal, R. R. 1986. Multile regression and correlation extensions of the Mantel test of matrix correspondence. Syst. Zool 35; 627-632 DOI ScienceOn |
13 | Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Homes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. and Zabeau, M. 1995. AFLP: a new technique for DNA finger- printing. Nucl. Acids Res. 23: 4407-4414 DOI |
14 | Armstrong, G. M. and Armstrong, J. K. 1981. Formae speciales and races of Fusarium oxysporum causing wilt diseases, Pp 391-399. In Nelson, P. E., Toussoun, T. A. and Cook, R. J. Eds. Fusarium: Disease, Biology, and Taxonomy. Pennsylvania state University Press, University Park, P.A |
15 | Booth, C. 1984. The Fusarium problem: Historical, economic and taxonomic aspects, Pp 1-13. In Moss, M. O. and Smith, L. E. Eds. The Applied Mycology of Fusarium. Cambridge University Press, Cambridge |
16 | Nelson, P. E., Toussoun, T. A. and Marasas, W. F. O. 1981. Fusarium: Diseases, Biology and Taxonomy. Pennsylvania State University Press, University Pp. 475 |
17 | Clear, R. M., Patrick, S. K. and Gaba, D. 2000. Prevalence of fungi and fusariotoxins on barley seed from western Canada, 1995 to 1997. Can. J. Plant Pathol. 22: 44-50 DOI ScienceOn |
18 | Doohan, F. M., Parry, D. W., Jenkinson, P. and Nicholson, P. 1998. The use of species-specifc PCR based assays to analyses Fusarium ear blight of wheat. Plant Pathol. 47: 197-205 DOI ScienceOn |
19 | Abd-Elsalam, K. A., Khalil, M. S., AAly, A. and Asran-Amal, A. 2002a. Genetic diversity among Fusarium oxysporum f sp. vasinfectum isolates revealed by UP-PCR and AFLP markers. Phytopathol. Mediterr. 41: 1-7 |
20 | Burgess, L. W. 1981. General ecology of the Fusaria, Pp 225-235. In Nelson, P. E., Toussoun, T. A., and Cook, R. J. Eds. Fusarium: Disease, Biology, and Taxonomy. Pennsylvania State University Press, University Park, P.A |
21 | Kss, E. and Wink, K. 1997. Phylogenetic relationships in the Papilionoideae (family Leguminosae) based on nucleotide sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2). Mol. Phyl. Evol. 8; 65-88 DOI ScienceOn |
22 | Gerlach, W. and H. I. Nirenberg. 1982. The genus Fusarium: A pictorial atlas. Mitt. Biol. Bundesanst Land-forstwirtsch. 209:1-406 |
23 | Goudet, J. 1995. FSTAT v-1.2: a computer program to calculate F-statistics. J. Hered. 86: 485-486 DOI |
24 | Huys, G., Coopman, R., Janssen, P. and Kersters, K. 1996. High resolution genotypic analysis of the genus Aeromonas by AFLP fingerprinting. Int. J. Syst. Bacteriol. 46: 572-580 DOI |
25 | Kiprop, E. K., Baudoin, J. P., Kimani, P. M., Mergeai, G. and Maquet, A. 2002. Characterization of Kenyan isolates of Fusarium udum from Pigeon pea by cultural characteristics, aggressiveness and AFLP analysis. Phytopathology 150: 517-527 DOI ScienceOn |
26 | Le Thierry d'Enneequin, M., Poupance, B. and Sarr, A. 2000. Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers. Theor. Appl. Genet. 100: 1061-1066 DOI |
27 | Majer, D., Lewis, B. G. and Mithen., R. 1998. Genetic variation among field isolates of Pyrenopeziza brassicae. Plant Pathol. 47; 22-28 DOI ScienceOn |
28 | Nei, M. and Li, W. H. 1979. Mathematical model for studying genetical variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 74: 5267-5273 |
29 | Sivaramakrishnan, S., Kannan, S. and Singh, S. D. 2002. Genetic variability of Fusarium wilt pathogen isolates of chickpea (Cicer arietinum L.) assessed by molecular markers. Mycopathologia. 155; 171-178 DOI |
30 | McMullen, M., Jones, R. and Gallenberg, D. 1997. Scab of wheat and barley: a re-emerging disease of devastating impact. Plant Dis. 81; 1340-1348 DOI ScienceOn |
31 | Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70; 3321-3323 |
32 | O'Donnell, K., Kistler, H. C., Cigelnik, E. and Ploetz, R. C. 1998. Multiple evolutionary origins of the fungus causing panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proc. Natl. Acad. Sci. USA 95: 2044-2049 |
33 | Robert, P. B., O'Donnell, K., Bonants, P. J. M. and Cigelnik, E. 2000. Gene genealogies and AFLP Analyses in the Fusarium oxysporum complex Identitfy monophyletic and nonmonophyletic formae speciales causing wilt and rot disease. Phytopathology 90: 891-900 DOI ScienceOn |
34 | Slatkin, M. and Barton, N. H. 1989. A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43: 1349-1368 DOI ScienceOn |
35 | Smith, T. K. and Sousadias, M. 1993. Fusaric acid content of swine feedstuffs. J. Agric. Food Chem. 1993: 2296-2298 |
36 | Snyder, W. C. and Hansen, H. N. 1940. The species concept Fusarium. Am. J. Bot. 27: 64-67 DOI ScienceOn |
37 | Sudhir K., Koichiro, T. and Masatoshi, N. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequencing alignment. Briefing In Bioimjormatics 5: 150-163 DOI ScienceOn |
38 | Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. 1997. The clustal X windows interface: flexible strategies for multiple sequence alignments aided by quality analysis tools. Nucl. Acids Res. 24: 4874-4882 DOI |
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