Browse > Article

Dasania marina gen. nov., sp. nov., of the Order Pseudomonadales, Isolated from Arctic Marine Sediment  

Lee, Yoo-Kyung (Polar BioCenter, Korea Polar Research Institute, KORDI)
Hong, Soon-Gyu (Polar BioCenter, Korea Polar Research Institute, KORDI)
Cho, Hyun-Hee (Polar BioCenter, Korea Polar Research Institute, KORDI)
Cho, Kyeung-Hee (Polar BioCenter, Korea Polar Research Institute, KORDI)
Lee, Hong-Kum (Polar BioCenter, Korea Polar Research Institute, KORDI)
Publication Information
Journal of Microbiology / v.45, no.6, 2007 , pp. 505-509 More about this Journal
Abstract
An obligately aerobic bacterium, strain KOPRI $20902^T$, was isolated from a marine sediment in Ny-${\AA}$lesund, Spitsbergen Islands, Norway. Cells were irregular rods and motile with polar monotrichous flagellum. The optimum growth temperature was $17-22^{\circ}C$. Cells grew best in pH 7.0-10.0 and 3-4% sea salts (corresponding to 2.3-3.1% NaCl). The novel strain required $Ca^{2+}$ or $Mg^{2+}$ in addition to NaCl for growth. Sequence analysis of 16S rRNA gene revealed that the Arctic isolate is distantly related with established species (<92.4% sequence similarity) and formed a monophyletic group with Cellvibrio, which formed a distinct phylogenetic lineage in the order Pseudomonadales. Predominant cellular fatty acids [$C_{16:1}\;{\omega}7c/15:0$ iso 2OH (45.3%), $C_{16:0}$ (18.4%), ECL 11.799 (11.2%), $C_{10:0}$ 3OH (10.4%)]; DNA G+C content (37.0 mol%); nitrate reduction to nitrogen; absence of aesculin hydrolysis, N-acetyl-${\beta}$-glucosaminidase and esterase; no assimilation of arabinose, galactose, glucose, lactose, maltose, and trehalose differentiated the strain from the genus Cellvibrio. Based on the phylogenetic and phenotypic characteristics, Dasania marina gen. nov., sp. nov. is proposed in the order Pseudomonadales. Strain KOPRI $20902^T$ (=KCTC $12566^T$=JCM $13441^T$) is the type strain of Dasania marina.
Keywords
Arctic; Cellvibrio; Dasania marina; marine bacterium; 16S rRNA gene;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
Times Cited By Web Of Science : 5  (Related Records In Web of Science)
Times Cited By SCOPUS : 5
연도 인용수 순위
1 Humphry, D.R., G.W. Black, and S.P. Cummings. 2003. Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev. Int. J. Syst. Evol. Microbiol. 53, 393-400   DOI   ScienceOn
2 Johnson, J.L. 1985. Dertermination of DNA base composition, p. 1-31. In G. Gottschalk (ed). Methods in Microbiology, Vol. 18. Academic Press Ltd., London, UK
3 Lee, Y.K., H.J. Jung, and H.K. Lee. 2006. Marine bacteria associated with the Korean brown alga, Undaria pinnatifida. J. Microbiol. 44, 694-698   과학기술학회마을
4 Mandel, M., L. Lgambi, J. Bergendahl, M.L. Dodson, and E. Scheltgen. 1970. Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid. J. Bacteriol. 101, 333-338   DOI
5 Swofford, D.L. 2002. PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts, USA
6 Collins, M.D. 1985. Analysis of isoprenoid quinines. Methods Microbiol. 18, 329-366   DOI
7 Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791   DOI   ScienceOn
8 Marmur, J. and P. Doty. 1962. Dertermination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5, 109-118   DOI
9 Cho, J.C. and S.J. Giovannoni. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70, 432-440   DOI
10 Bogan, B.W., W.R. Sullivan, K.J. Kayser, K.D. Derr, H.C. Aldrich, and J.R. Paterek. 2003. Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils. Int. J. Syst. Evol. Microbiol. 53, 1389-1395   DOI   ScienceOn
11 Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgin. 1997. The CLUSTAL X window interface: Flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic Acids Res. 24, 4876-4882
12 Mergaert J., D. Lednicka, J. Goris, M.C. Cnockaert, P. De Vos, and J. Swings. 2003. Taxonomic study of Cellvibrio strains and description of Cellvibrio ostraviensis sp. nov., Cellvibrio fibrivorans sp. nov. and Cellvibrio gandavensis sp. nov. Int. J. Syst. Evol. Microbiol. 53, 465-471   DOI   ScienceOn
13 Fitch, W.M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406-416   DOI   ScienceOn
14 Lane, D.J. 1991. 16S/23S rRNA sequencing. p. 115-175. In E. Stackebrandt and M. Goodfellow (eds.), Nucleic acid techniques in bacterial systematics, John Wiley and Sons. New York, USA
15 Chun, J., J.-H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim, and Y.W. Lim. 2007. EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence. Int. J. Syst. Evol. Microbiol. 57, 2259-2261   DOI   ScienceOn
16 Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376   DOI
17 Juni, E. and K. Bövre. 2005. Family II. Moraxellaceae Rossau, Van Landschoot, Gillis and De Ley 1991, 317VP. Brenner, p. 411- 417. In D.J. Brenner, N.R. Krieg, and J.T. Staley (eds.), Bergey's manual of systematic bacteriology, 2nd ed. Vol. 2 The proteobacteria. Part B. The Gammaproteobacteria. Springer, New York, USA
18 Kimura, M. 1980. A simple mehtod for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120   DOI
19 Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425   PUBMED
20 Garrity, G.M., J.A. Bell, and T. Lilburn. 2005. Order IX. Pseudomonadales Orla-Jensen 1921, $270^{AL}$. Brenner, p. 323. In D.J. Brenner, N.R. Krieg, and J.T. Staley (eds.), Bergey's manual of systematic bacteriology, 2nd ed, Vol. 2. The proteobacteria. Part B. The Gammaproteobacteria. Springer, New York, USA
21 Minnikin, D.E., A.G. O'Donnell, M. Goodfellow, G. Alderson, M. Athalye, A. Schaal, and J.H. Parlett. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233-241   DOI   ScienceOn