A Culture-Based Study of the Bacterial Communities within the Guts of Nine Longicorn Beetle Species and their Exo-enzyme Producing Properties for Degrading Xylan and Pectin |
Park, Doo-Sang
(Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology)
Oh, Hyun-Woo (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) Jeong, Won-Jin (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) Kim, Hyang-Mi (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) Park, Ho-Yong (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) Bae, Kyung-Sook (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) |
1 | Amann, R.I., W. Ludwig, and K.H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 PUBMED |
2 | Avigad, G. and Y. Milner. 1967. Turbidimetric assay for pectinase activity. Isr. J. Chem. 5, 175-180 DOI |
3 | Brauman, A., J. Dore, P. Eggleton, D. Bignell, J.A. Breznak, and M.D. Kane. 2001. Molecular phylogenetic profiling of prokaryotic communities in guts of termites with different feeding habits. FEMS Microbiol. Ecol. 35, 27-36 DOI |
4 | Chun, J. 1995. Computer-assisted classification and identification of actinomycetes, Ph. D. thesis. University of Newcastle, Newcastle upon Tyne, UK |
5 | Chun, J., J.H. Lee, Y. Jung, M. Kim, S. Kim, B.K. Kim, and Y.W. Lim. 2007. A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence. Int. J. Syst. Evol. Microbiol. in press |
6 | Friedrich, M.W., D. Schmitt-Wagner, T. Lueders, and A. Brune. 2001. Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus. Appl. Environ. Microbiol. 67, 4880-4890 DOI |
7 | Girard, C. and L. Jouanin. 1999. Molecular cloning of cDNAs encoding a range of digestive enzymes from a phytophagous beetle, Phaedon cochleariae. Insect Biochem. Mol. Biol. 29, 1129-1142 DOI ScienceOn |
8 | Heo, S., J. Kwak, H.W. Oh, D.S. Park, K.S. Bae, D.H. Shin, and H.Y. Park. 2006. Characterization of an extracellular xylanase in Paenibacillus sp. HY-8 isolated from an herbivorous longicorn beetle. J. Microbiol. Biotechnol. 16, 1753-1759 과학기술학회마을 |
9 | Kim, J.I. 2002. A tentative list of Korean Coleoptera (Insecta), containing a species of newly recorded family. J. Kor. Biota 7, 225-261 |
10 | Lilburn, T.G., K.S. Kim, N.E. Ostrom, K.R. Byzek, J.R. Leadbetter, and J.A. Breznak. 2001. Nitrogen fixation by symbiotic and free-living spirochetes. Science 292, 2495-2498 DOI ScienceOn |
11 | Skipper, N., M. Sutherland, R.M. Davies, D. Kilburn, R. Miller, A. Warren, and R. Wong. 1985. Secretion of a bacterial cellulase by yeast. Science 230, 958 DOI PUBMED ScienceOn |
12 | Slaytor, M., A. Sugimoto, J. Azuma, K. Murashima, and T. Inoue. 1997. Cellulose and xylan utilisation in the lower termite Reticulitermes speratus. J. Insect. Physiol. 43, 235-242 DOI ScienceOn |
13 | Lane, D.J. 1991. 16S/23S rRNA sequencing. In E. Stackebrandt and M. Goodfellow, Nucleic acid techniques in bacterial systematics. Wiley, New York, USA |
14 | Lee, S.M. 1987. The longicorn beetles of Korean peninsula. National Science Museum, Seoul, Republic of Korea |
15 | Tokuda, G., N. Lo, H. Watanabe, M. Slaytor, T. Matsumoto, and H. Noda. 1999. Metazoan cellulase genes from termites: intron/exon structures and sites of expression. Biochim. Biophys. Acta 1447, 146-59 DOI PUBMED ScienceOn |
16 | Breznak, J.A. 1982. Intestinal microbiota of termites and other xylophagous insects. Annu. Rev. Microbiol. 36, 323-343 DOI PUBMED ScienceOn |
17 | Kwak, J., K. Lee, D.H. Shin, J.S. Maeng, D.S. Park, H.W. Oh, K.S. Bae, and H.Y. Park. 2007. Biochemical and genetic characterization of an extracellular metalloprotease produced from Serratia proteamaculans. J. Microbiol. Biotechnol. 17, 761-768 과학기술학회마을 |
18 | Suh, S.O., C.J. Marshall, J.V. McHugh, and M. Blackwell. 2003. Wood ingestion by passalid beetles in the presence of xylosefermenting gut yeasts. Mol. Ecol. 12, 3137-3145 DOI ScienceOn |
19 | Chen, D.Q. and A.H. Purcell. 1997. Occurrence and transmission of facultative endosymbionts in aphids. Curr. Microbiol. 34, 220-225 DOI |
20 | Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootsrap. Evolution 39, 783-791 DOI ScienceOn |
21 | Rondon, M.R., R.M. Goodman, and J. Handelsman. 1999. The Earth's bounty: assessing and accessing soil microbial diversity. Trends Biotechnol. 17, 403-409 DOI ScienceOn |
22 | Lee, G.E., C.H. Kim, H.J. Kwon, J. Kwak, D.H. Shin, D.S. Park, K.S. Bae, and H.Y. Park. 2004a. Biochemical characterization of an extracellular protease in Serratia proteomaculans isolated from a spider. Kor. J. Microbiol. 40, 269-274 과학기술학회마을 |
23 | Watanabe, H., H. Noda, G. Tokuda, and N. Lo. 1998. A cellulase gene of termite origin. Nature 394, 330-331 DOI ScienceOn |
24 | Zhou, X., J.A. Smith, F.M. Oi, P.G. Koehler, G.W. Bennett, and M.E. Scharf. 2007. Correlation of cellulase gene expression and cellulolytic activity throughout the gut of the termite Reticulitermes flavipes. Gene 395, 29-39 DOI ScienceOn |
25 | Brune, A. and M. Friedrich. 2000. Microecology of the termite gut: structure and function on a microscale. Curr. Opin. Microbiol. 3, 263-269 DOI ScienceOn |
26 | Kinya, K., S. Kozaki, and M. Sakuranaga. 1998. Degradation of lignin compounds by bacteria from termite guts Biotechnol. Lett. 20, 459-462 DOI ScienceOn |
27 | Ohkuma, M. 2003. Termite symbiotic systems: efficient bio-recycling of lignocellulose. Appl. Microbiol. Biotechnol. 61, 1-9 DOI PUBMED |
28 | Cleveland, L.R. 1923. Symbiosis between termites and their intestinal protozoa. Proc. Natl. Acad. Sci. USA 9, 424-428 |
29 | Egert, M., B. Wagner, T. Lemke, A. Brune, and M.W. Friedrich. 2003. Microbial community structure in midgut and hindgut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae). Appl. Environ. Microbiol. 69, 6659-6668 DOI |
30 | Dillon, R.J. and V.M. Dillon. 2004. The gut bacteria of insects: nonpathogenic interactions. Annu. Rev. Entomol. 49, 71-92 DOI ScienceOn |
31 | Park, D.S., H.W. Oh, H. Kim, S.Y. Heo, N. Kim, K.Y. Seol, and H.Y. Park. 2007. Screening of bacteria producing lipase from insect gut: isolation and characterization of a strain, Burkholderia sp. HY-10 producing lipase. Kor. J. Appl. Entomol. 46, 131-139 과학기술학회마을 DOI |
32 | Lee, S.J., S.R. Kim, H.J. Yoon, I. Kim, K.S. Lee, Y.H. Je, S.M. Lee, S.J. Seo, H. Dae Sohn, and B.R. Jin. 2004b. cDNA cloning, expression, and enzymatic activity of a cellulase from the mulberry longicorn beetle, Apriona germari. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 139, 107-116 DOI ScienceOn |
33 | Hugenholtz, P. 2002. Exploring prokaryotic diversity in the genomic era. Genome Biology 3, 1-8 |
34 | Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 DOI |
35 | Lilburn, T.G., T.M. Schmidt, and J.A. Breznak. 1999. Phylogenetic diversity of termite gut spirochaetes. Environ. Microbiol. 1, 331-345 DOI ScienceOn |
36 | Broderick, N.A., K.F. Raffa, R.M. Goodman, and J. Handelsman. 2004. Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl. Environ. Microbiol. 70, 293-300 DOI |
37 | Lemke, T., U. Stingl, M. Egert, M.W. Friedrich, and A. Brune. 2003. Physicochemical conditions and microbial activities in the highly alkaline gut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae). Appl. Environ. Microbiol. 69, 6650-6658 DOI |
38 | Altschul, S.F., T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman. 1997. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 DOI |
39 | Hugenholtz, P., B.M. Goebel, and N.R. Pace. 1998. Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774 (Erratum, 180, 6793) PUBMED |
40 | Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882 DOI |