Browse > Article

Archaeal Communities in Mangrove Soil Characterized by 16S rRNA Gene Clones  

Yan, Bing (State Key Laboratory for Agricultural Microbiology, Huazhong Agricultural University)
Hong, Kui (State Key Laboratory for Agricultural Microbiology, Huazhong Agricultural University)
Yu, Zi-Niu (State Key Laboratory for Agricultural Microbiology, Huazhong Agricultural University)
Publication Information
Journal of Microbiology / v.44, no.5, 2006 , pp. 566-571 More about this Journal
Abstract
An archaeal 16S rRNA gene library was constructed from mangrove soil. Phylogenetic analysis revealed archaea in mangrove soil including the Crenarchaeota (80.4%) and Euryarchaeota (19.6%) phyla. The archaeal community in mangrove soil appears to be a mixture of organisms found in a variety of environments with the majority being of marine origin.
Keywords
mangrove; archaea; phylogeny; 16S rDNA;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
Times Cited By Web Of Science : 16  (Related Records In Web of Science)
Times Cited By SCOPUS : 14
연도 인용수 순위
1 Chaban, B., S.Y.M. Ng, and K.F. Jarrell. 2006. Archaeal habitats from the extreme to the ordinary. Can. J. Microbiol. 52, 73-116   DOI   ScienceOn
2 Costanza, R., R.d Arge, R. de Groot, S. Farberk, M. Grasso, B. Hannon, K. Limburg, S. Naeem, R.V. O'Neill, J. Paruelo, R.G. Raskin, P. Suttonkk, and M. van den Belt. 1997. The value of the world's ecosystem services and nature capital. Nature 387, 253-260   DOI   ScienceOn
3 Karner, M.B., E.F. De Long, and D.M. Karl. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409, 507-510   DOI   ScienceOn
4 Nercessian, O., Y. Fouquet, C. Pierre, D. Prieur, and C. Jeanthon. 2005. Diversity of Bacteria and Archaea associated with a carbonate-rich metalliferous sediment sample from the Rainbow vent field on the Mid-Atlantic Ridge. Environ. Microbiol. 7, 698-714   DOI   ScienceOn
5 'Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882   DOI
6 Cole, J.R., B. Chai, T.L. Marsh, R.J. Farris, Q. Wang, S.A. Kulam, S. Chandra, D.M. McGarrell, T.M. Schmidt, G.M. Garrity, and J.M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31, 442-443   DOI   ScienceOn
7 Donovan, S.E., K.J. Purdy, M.D. Kane, and P. Eggleton. 2004. Comparison of EuryArchaea strains in the guts and food-soil of the soil-feeding termite Cubitermes fungifaber across different soil types. Appl. Environ. Microbiol. 70, 3884-3892   DOI   ScienceOn
8 Konneke, M., A.E. Bernhard, J.R. delaTorre, C.B. Walker, J.B. Waterbury, and D.A. Stahl. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437, 543-546   DOI   ScienceOn
9 Ananda, K. and K.R. Sridhar. 2002. Diversity of endophytic fungi in the roots of mangrove species on the west coast of India. Can. J. Microbiol. 48, 871-878   DOI   ScienceOn
10 Girguis, P.R., V.J. Orphan, S.J. Hallam, and E.F. De Long. 2003. Growth and methane oxidation rates of anaerobic methanotrophic Archaea in a continuous-flow bioreactor. Appl. Environ. Microbiol. 69, 5472-5482   DOI
11 Kim, B.S., H.M. Oh, H. Kang, and J. Chun. 2005. Archaeal diversity in tidal flat sediment as revealed by 16S rDNA analysis. J Microbiol. 43, 144-151   과학기술학회마을
12 Schleper, C., G. Jurgens, and M. Jonuscheit. 2005 Genomic studies of uncultivated Archaea. Nature Res. Microbiol. 3, 479-488   DOI   ScienceOn
13 Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5, 150-163   DOI   ScienceOn
14 Holguin, G., P. Vazquez, and Y. Bashan. 2001. The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview. Biol. Fertil. Soils 33, 265-278   DOI
15 Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequence in multiple sequence alignments. Bioinformatics 20, 2317-2319   DOI   ScienceOn
16 Huang, L.N., Y.Q. Chen, H. Zhou, S. Luo, and C.Y. Lan. 2003. Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill. FEMS Microbiol. Ecol. 46, 171-177   DOI   ScienceOn
17 De Long, E.F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. 89, 5685-5689
18 Good, I.L. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40, 237-264   DOI
19 McCaig, A.E., L.A. Glover, and J.I. Prosser. 1999. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65, 1721-1730
20 Vetriani, C., H.W. Jannasch, B.J. Macgregor, D.A. Stahl, and A.L. Reysenbach. 1999. Population structure and Phylogenetic Characterization of Marine Benthic Archaea in Deep-Sea Sediments. Appl. Environ. Microbiol. 65, 4375-4384
21 Ronnback, P. 1999. The ecological basis for economic value of seafood production supported by mangrove ecosystems. Ecol. Econ. 29, 235-252   DOI   ScienceOn
22 Thompson, J.R., L.A. Marcelino, and M.F. Polz. 2002. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res. 30, 2083-2088   DOI   ScienceOn
23 Munson, M.A., D.B. Nedwell, and T.M. Embley. 1997. Phylogenetic Diversity of Archaea in Sediment Samples from a Coastal Salt Marsh. Appl. Environ. Microbiol. 63, 4729-4733
24 Tatiana, A., T. Thomas, and L. Madden. 1999. Blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174, 247-250   DOI