1 |
Burge, C. and S. Karlin. 1997. Prediction of complete gene structure in human genomic DNA. J. Mol. Biol. 268, 78-94
DOI
ScienceOn
|
2 |
Frech, K., K. Quandt, and T. Werner. 1997. Software for the analysis of DNA sequence elements of transcription. Comput. Appl. Biosci. 13, 89-97
PUBMED
|
3 |
Hertz, G.Z., G.W. Hartzell III, and G.D. Stormo. 1990. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Applic. Biosci. 6, 81-92
|
4 |
Kim, E.Y., M.S. Shin, J.H. Rhee, and H.E. Choy. 2004. Factor influencing preferential utilization of RNA polymerase containing sigma-38 in stationary-phase gene expression in Escherichia coli. J. Microbiol. 42, 103-110
PUBMED
|
5 |
Mount, D.W. 2001. Bioinformatics : sequence and genome analysis. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
|
6 |
Schneider, T.D. and R.M. Stephens. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18, 6097-6100
DOI
ScienceOn
|
7 |
Salgado, H., S. Gama-Castro, A. Martinez-Antonio, E. Diaz-Peredo, F. Sanchez-Solano, M. Peralta-Gil, D. Garcia-Alonso, V. Jimenez- Jacinto, A. Santos-Zavaleta, C. Bonavides-Martinez, and J.H. Collado-Vides. 2004. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic. Acids Res. 29, 72-74
|
8 |
Thieffry, D., H. Salgado, A.M. Huerta, and J. Collado-Vides. 1998. Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12. Bioinformatics. 14, 391-400
DOI
ScienceOn
|
9 |
Sinha, S. and M. Tompa. 2002. Discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Res. 30, 5549-5560
DOI
ScienceOn
|
10 |
Collado-Vides, J. 1992. Grammatical model of the regulation of gene expression. Proc. Natl. Acad. Sci. USA. 89, 9405-9409
|
11 |
Ohler, U. and H. Niemann. 2001. Identification and analysis of eukaryotic promoters: recent computational approaches. Trends in Genetics. 17, 56-60
DOI
ScienceOn
|
12 |
Fickett, J. and A. Hatzigeorgiou. 1997. Eukaryotic promoter recognition. Genome Research. 7, 861-878
PUBMED
|
13 |
Gross, C.A. and M. Lonetto. 1992. Bacterial sigma factors. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
|
14 |
Pedersen, A., P. Baldi, Y. Chauvin, and S. Brunak. 1999. The biology of eukaryotic promoter prediction - a review. Comput. Chemistry. 23, 191-207
DOI
ScienceOn
|
15 |
Hernandez, E., A. Johnson, V. Notario, A. Chen, and J. Richert. 2002. AUA as a translation initiation site in vitro for the human transcription factor Sp3. J. Biochem. Mol. Biol. 35, 273-282
DOI
PUBMED
|
16 |
Ko, J., D.S. Na, Y.H. Lee, S.Y. Shin, J.H. Kim, B.G. Hwang, B.I. Min, and D.S. Park. 2002. cDNA microarray analysis of the differential gene expression in the neuropathic pain and electroacupunction treatment models. J. Biochem. Mol. Biol. 35, 420-427
DOI
PUBMED
|
17 |
Jones, B.D. 2005. Salmonella invasion gene regulation: a story of environmental awarenss. J. Microbiol. 43, 110-117
|