1 |
R. Jackups and J. Liang, "Combinatorial analysis for sequence and spatial motif discovery in short sequence fragments," IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 7, no. 3, pp. 524-536, 2010.
DOI
|
2 |
H. Zheng, H. Wang, and F. Azuaje, "Improving pattern discovery and visualization of SAGE data through poisson-based self-adaptive neural networks," IEEE Transactions on Information Technology in Biomedicine, vol. 12, no. 4, pp. 459-469, 2008.
DOI
|
3 |
O. Westesson, L. Barquist, and I. Holmes, "HandAlign: bayesian multiple sequence alignment, phylogeny and ancestral reconstruction," Bioinformatics, vol. 28, no. 8, pp. 1170-1171, 2012.
DOI
|
4 |
A. Kawrykow, G. Roumanis, A. Kam, D. Kwak, C. Leung, C. Wu, et al., "Phylo: a citizen science approach for improving multiple sequence alignment," PLoS One, vol. 7, no. 3, article no. e31362, 2012.
|
5 |
E. Pruesse, J. Peplies, and F. O. Glockner, "SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes," Bioinformatics, vol. 28, pp. 1823-1829, 2012.
DOI
|
6 |
K. C. Miranda, T. Huynh, Y. Tay, Y. S. Ang, W. L. Tam, A. M. Thomson, B. Lim, and I. Rigoutsos, "A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes," Cell, vol. 126, no. 6, pp. 1203-1217, 2006.
DOI
|
7 |
M. Hafner, P. Landgraf, J. Ludwig, A. Rice, T. Ojo, C. Lin, D. Holoch, C. Lim, and T. Tuschl, "Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing," Methods, vol. 44, no. 1, pp. 3-12, 2008.
DOI
|
8 |
N. Lavrac, P. Flach, and B. Zupan, "Rule evaluation measures: a unifying view," in Proceedings of 9th International Workshop on Inductive Logic Programming (ILP-99), Bled, Slovenia, 1999, pp. 174-185.
|
9 |
L. Geng and H. J. Hamilton, "Interestingness measures for data mining: a survey," ACM Computing Surveys (CSUR), vol. 38, no. 3, article no. 9, 2006.
|
10 |
I. Bentwich, "Prediction and validation of microRNAs and their targets," FEBS Letters, vol. 579, no. 26, pp. 5904-5910, 2005.
DOI
|
11 |
M. R. Friedlander, W. Chen, C. Adamidi, J. Maaskola, R. Einspanier, S. Knespel, and N. Rajewsky, "Discovering microRNAs from deep sequencing data using miRDeep," Nature Biotechnology, vol. 26, no. 4, pp. 407-415, 2008.
DOI
|
12 |
V. Williamson, A. Kim, B. Xie, G. O. McMichael, Y. Gao, and V. Vladimirov, "Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation," Briefings in Bioinformatics, vol. 14, no. 1, pp. 36-45, 2013.
DOI
|
13 |
Y. Saeys, I. Inza, and P. Larranaga, "A review of feature selection techniques in bioinformatics," Bioinformatics, vol. 23, no. 19, pp. 2507-2517, 2007.
DOI
|
14 |
A. K. C. Wong, D. Zhuang, G. C. L. Li, and E. S. A. Lee, "Discovery of non-induced patterns from sequences," in Proceedings of 5th IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2010), Nijmegen, The Netherlands, 2010, pp. 149-160.
|
15 |
M. R. Friedlander, S. D. Mackowiak, N. Li, W. Chen, and N. Rajewsky, "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades," Nucleic Acids Research, vol. 40, no. 1, pp. 37-52, 2012.
DOI
|
16 |
W. Shen, M. Chen, G. Wei, and Y. Li, "MicroRNA prediction using a fixed-order Markov model based on the secondary structure pattern," PLoS One, vol. 7, no. 10, article no. e48236, 2012.
|
17 |
X. Ji, J. Bailey, and G. Dong, "Mining minimal distinguishing subsequence patterns with gap constraints," Knowledge and Information Systems, vol. 11, no. 3, pp. 259-286, 2007.
DOI
|
18 |
G. Dong and J. Bailey, Contrast Data Mining: Concepts, Algorithms, and Applications. Boca Raton, FL: CRC Press, 2013.
|
19 |
R. C. de Amorim, "Computational methods of feature selection," Information Processing & Management, vol. 45, no. 4, pp. 490-493, 2009.
DOI
|
20 |
G. Nuel, L. Regad, J. Martin, and A. C. Camproux, "Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data," Algorithms for Molecular Biology, vol. 5, article no. 15, 2010.
|
21 |
B. Liu, J. Li, and M. J. Cairns, "Identifying miRNAs, targets and functions," Briefings in Bioinformatics, vol. 15, no. 1, pp. 1-19, 2014.
DOI
|
22 |
R. M. Marin, M. Sulc, and J. Vanicek, "Searching the coding region for microRNA targets," RNA, vol. 19, no. 4, pp. 467-474, 2013.
DOI
|
23 |
S. T. Kalinowski, T. M. Andrews, M. J. Leonard, and M. Snodgrass, "Are Africans, Europeans, and Asians different 'races'? A guided-inquiry lab for introducing undergraduate students to genetic diversity and preparing them to study natural selection," CBE Life Sciences Education, vol. 11, no. 2, pp. 142-151, 2012.
DOI
|