Browse > Article
http://dx.doi.org/10.7852/ijie.2017.35.1.30

Development and validation of microsatellite markers for the endangered red-spotted apollo butterfly, Parnassius bremeri (Lepidoptera: Papilionidae), in South Korea  

Kim, Min Jee (College of Agriculture & Life Sciences, Chonnam National University)
Jeong, Su Yeon (College of Agriculture & Life Sciences, Chonnam National University)
Kim, Sung Soo (Research Institute for East Asian Environment and Biology)
Kim, Iksoo (College of Agriculture & Life Sciences, Chonnam National University)
Publication Information
International Journal of Industrial Entomology and Biomaterials / v.35, no.1, 2017 , pp. 30-38 More about this Journal
Abstract
The red-spotted apollo butterfly, Parnassius bremeri Bremer, 1864 (Lepidoptera: Papilionidae), is an endangered species in South Korea. Development and application of molecular markers to assess population genetics perspectives can be used as a basis to establish effective conservation strategies. In this study, we developed 12 microsatellite markers specific to P. bremeri using Illumina paired-end sequencing and applied the markers to South Korean populations to understand population characteristics. Genotyping of 40 P. bremeri individuals from three localities showed that at each locus, the observed number of alleles ranged from 6 to 22 and the observed and expected heterozygosities were 0.500-1.00 and 0.465 to 0.851, respectively. Significant deviation from the Hardy-Weinberg equilibrium was not observed in all loci studied. The population based $F_{ST}$ and $R_{ST}$ collectively suggest that at least the Samcheok population in northernmost Gangwon Province has a significant divergence from the remaining two populations (P < 0.01), and this result is also reflected in the forewing length. Further studies with an increased sample size will be necessary to draw robust conclusions and devise conservation strategies.
Keywords
Parnassius bremeri; Endangered species; Microsatellite; Molecular marker;
Citations & Related Records
Times Cited By KSCI : 5  (Citation Analysis)
연도 인용수 순위
1 Kim S-R, Kim K-Y, Jeong JS, Kim MJ, Kim K-H, Choi G-H et al (2017) Population genetic characterization of the Japanese oak silkmoth, Antheraea yamamai (Lepidoptera: Saturniidae), using novel microsatellite markers and mitochondrial DNA gene sequences. Genet Mol Res 16, gmr1602908.
2 Kim DS, Kwon YJ, Kim DH, Kim CH, Seo MH, Park SJ et al (2011a) Habitat restoration initiative for endangered species Parnassius bremeri (Lepidoptera: Papilionidae) in Korea. Journal of the Korean Institute of Landscape Architecture 39, 98-106.
3 Kim DS, Park SJ, Cho Y, Kim KD, Tho JW, Seo HS et al (2012) The analysis and conservation of patch network of endangered butterfly Parnassius bremeri (Lepidoptera: Papilionidae) in fragmented landscapes. Korean J Appl Entomol 51, 23-31.   DOI
4 Kim DS, Park DS, Kwon YJ, Seo SJ, Kim CH, Park SJ et al (2011b) Metapopulation structure and movement of a threatened butterfly Parnassius bremeri (Lepidoptera: Papilionidae) in Korea. Korean J Appl Entomol 50, 97-105.   DOI
5 Ko MS, Lee JS, Kim CH, Kim SS, Park KT (2004) Distributional Data and Ecological Characteristics of Parnassius bremeri Bremer in Korea. Korean J Appl Entomol 43, 7-14.
6 Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2, Nat Methods 9, 357-359.   DOI
7 Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948.   DOI
8 Meglecz E, Pecsenye K, Varga Z, Solignac M (1998) Comparison of differentiation pattern at allozyme and microsatellite loci in Parnassius mnemosyne (Lepidoptera) populations. Hereditas 128, 95-103.
9 Kim DS, Cho YB, Koh JK (1999) The factors of local disappearance and a plan of restoration for Parnassius bremeri form Okchon-gun, Korea. Korean J Environ Biol 17, 469-479.
10 Mira O, Martinez JG, Dawson DA, Tinaut A, Sanchez-Prieto C (2104) Twenty new microsatellite loci for population structure and parentage studies of Parnassius apollo nevadensis (Lepidoptera; Papilionidae). J Insect Conserv 18, 771-779.   DOI
11 Park KT, Kim SS (1997) Atlas of butterflies. Korea Research institute of bioscience and biotechnology and center for insect systematic, Korea.
12 Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research. Bioinformatics 28, 2537-2539.   DOI
13 Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48, 361-372.   DOI
14 Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10, 564-567.   DOI
15 Faircloth BC (2008) msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol Resour 8, 92-94.   DOI
16 Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3, 294-299.
17 Rousset F (2008) genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8, 103-106.   DOI
18 Petenian F, Meglecz E, Genson G, Rasplus JY, Faure E (2005) Isolation and characterization of polymorphic microsatellites in Parnassius apollo and Euphydryas aurinia (Lepidoptera). Mol Ecol Notes 5, 243-245.   DOI
19 Raymond M, Rousset F (1995) GENEPOP (ver 1.2): population genetics software for exact tests and ecumenicism. J Hered 86, 248-249.   DOI
20 Rice WR (1989) Analyzing tables of statistical tests. Evolution 43, 223-225.   DOI
21 Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132, 365-386.
22 Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139, 457-462.
23 Swofford DS (1999) PAUP* 4.0: phylogenetic analysis using parsimony (*and other methods). Version 4b2. Sinauer Associates, Sunderland, Mass.
24 Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7, 381-397.   DOI
25 Keyghobadi N, Roland J, Strobeck C (1999) Influence of landscape on the population genetic structure of the alpine butterfly Parnassius smintheus (Papilionidae). Mol Ecol 8, 1481-1495.   DOI
26 Goudet J (2001) FSTAT: A program to estimate and test gene diversities and fixation indices (version 2.9.3). http://www2.unil.ch/popgen/softwares/fstat.htm. Accessed 31 May 2017.
27 Hartl DL, Clark AG (1997) Principles of population genetics (3rd ed). Sinauer Associates, Sunderland.
28 Hebert PD, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proc Biol Sci 270, 313-321.   DOI
29 Kim YS (2005) Illustrated Book of Korean Butterflies in Color. Kyo-Hak Pub. Co., Seoul, Korea.
30 Kim MI, Baek JY, Kim MJ, Jeong HC, Kim KG, Bae CH et al(2009) Complete nucleotide sequence and organization of the mitogenome of the red-spotted apollo butterfly, Parnassius bremeri (Lepidoptera: Papilionidae) and comparison with other lepidopteran insects. . Mol Cells 29, 1-10.   DOI
31 Yue GH, Orban L (2000) Rapid isolation and characterization of microsatellites from the genome of Asian arowana (Scleropages formosus, Osteoglossidae, Pisces). Mol Ecol 9, 1007-1009.   DOI
32 Weir SW (1990) Genetic data analysis II. Sinauer Associates, Sunderland
33 Weir BS and Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.