Comparison of gloverin gene expression patterns between domesticated and wild silkworms |
Kim, Seong-Ryul
(Department of Agricultural Biology, National Academy of Agricultural Science, RDA)
Choi, Kwang-Ho (Department of Agricultural Biology, National Academy of Agricultural Science, RDA) Kim, Sung-Wan (Department of Agricultural Biology, National Academy of Agricultural Science, RDA) Park, Seung-Won (Department of Biotechnology, Catholic University of Daegu) |
1 | Ekblom R, Galindo J (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 107, 1-15. DOI |
2 | Hara S, Yamakawa M (1995a) Moricin, a novel antibacterial peptide, isolated from the silkworm, Bombyx mori. J Biol Chem 270, 29923-29927. DOI |
3 | Hara S, Yamakawa M (1995b) A novel antibacterial peptide family isolated from the silkworm, Bombyx mori. Biochem J 310, 651-656. DOI |
4 | Axen A, Carlsson A, Engstrom A, Bennich H (1997) Gloverin, an antibacterial protein from the immune hemolymph of Hyalophora pupae. Eur J Biochem 247, 614-619. DOI |
5 | Bulet P, Hetru C, Dimarcq JL, Hoffmann D (1999) Antimicrobial peptides in insects: structure and function. Dev Comp Immunol 23, 329-344. DOI |
6 | Castillo JC, Creasy T, Kumari P, Shetty A, Shokal U, Tallon LJ (2015) Drosophila anti-nematode and antibacterial immune regulators revealed by RNA-Seq. BMC Genomics 16, 519-528. DOI |
7 | Cheng T, Fu B, Wu Y, Long R, Liu C, Xia Q (2015) Transcriptome sequencing and positive selected genes analysis of Bombyx mandarina. PLOS ONE 10, e0122837. DOI |
8 | Costa V, Aprile M, Esposito R, Ciccodicola A (2013) RNA-Seq and human complex diseases: recent accomplishments and future perspectives. Eur J Hum Genet 21, 134-142. DOI |
9 | Daines B, Wang H, Wang L, Li Y, Han Y, Emmert D, Gelbart W, Wang X, Li W, Gibbs R, Chen R (2011) The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res 21, 315-324. DOI |
10 | de Klerk E, den Dunnen JT, 't Hoen PA (2014) RNA sequencing: from tag-based profiling to resolving complete transcript structure. Cell Mol Life Sci 71, 3537-3551. DOI |
11 | Hultmark D (2003) Drosophila immunity: paths and patterns. Curr Opin Immunol 15, 12-19. DOI |
12 | Hoffman JA, Kafatos FC, Janeway CA, Ezekowitz RA (1999) Phylogenetic perspectives in innate immunity. Science 284, 1313-1318. DOI |
13 | Hoffmann JA (2003) The immune response of Drosophila. Nature 426, 33-38. DOI |
14 | Huang L, Cheng T, Xu P, Cheng D, Fang T, Xia Q (2009) A genome-wide survey for host response of Silkworm, Bombyx mori during pathogen bacillus bombyseptieus infection. PLos ONE 4, e8098. DOI |
15 | Kaneko Y, Furukawa Y, Tanaka H, Yamakawa M (2007) Expression of Antimicrobial Peptide Genes Encoding Enbocin and Gloverin Isoforms in the Silkworm, Bombyx mori. Biosci Biotechnol Biochem 71, 2233-2241. DOI |
16 | Kaneko Y, Furukawa S, Tanaka H, Yamakawa M (2007) Expression of antimicrobial peptide genes encoding Enbocin and Gloverin isoforms in the silkworm, Bombyx mori. Biosci Biotechnol Biochem 71, 2233-2241. DOI |
17 | Kawaoka S, Katsuma S, Daimon T, Isono R, Omuro N, Mita K, Shimada T (2008) Functional analysis of four Gloverin-like genes in the silkworm, Bombyx mori. Arch Insect Biochem Physiol 67, 87-96. DOI |
18 | Lemaitre B, Hoffmann J (2007) The host defense of Drosophila melanogaster. Annu Rev Immunol 25, 697-743. DOI |
19 | Kurata S, Ariki S, Kawabata S (2006) Recognition of pathogens and activation of immune responses in Drosophila and horseshoe crab innate immunity. Immunobiology 211, 237-249. DOI |
20 | Lemaitre B (2004) The road to Toll. Nat Rev Immunol 4, 521-527. DOI |
21 | Liu T, Tang S, Zhu S, Tang Q, Zheng X (2014) Transcriptome comparison reveals the patterns of selection in domesticated and wild ramie (Boehmeria nivea L. Gaud). Plant Mol Biol 86, 85-92. DOI |
22 | Szovenyi P, Perroud PF, Symeonidi A, Stevenson S, Quatrano RS, Rensing SA et al. (2015) De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Mol Ecol Resour 15, 203-215. DOI |
23 | Mrinal N, Nagaraju J (2008) Intron loss is associated with gain of function in the evolution of the gloverin family of antibacterial genes in Bombyx mori. J Biol Chem 283, 23376-23387. DOI |
24 | Ozsolak F, Milos PM (2011) RNA sequencing: advances, challenges and opportunities. Nat Rev Genet 12, 87-98. DOI |
25 | Park SW, Kang SW, Goo TW, Kim SR, Lee GG, Paik SY (2010) Tissue-specific gene expression analysis of silkworm (Bombyx mori) by quantitative real-time RT-PCR. BMB Rep 43, 480-484. DOI |
26 | Tanaka H, Ishibashi J, Fujita K, Nakajima Y, Sagisaka A et al. (2008) A genome-wide analysis of genes and gene families involved in innate immunity of Bombyx mori. Insect Biochem Mol Biol 38, 1087-1110. DOI |
27 | Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10, 57-63. DOI |
28 | Weinstock GM, Robinso GE et al. (2006) Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443, 931-949. DOI |
29 | Xia Q, Cheng D, Duan J, Wang G, Cheng T, Zha X, Liu C et al. (2007) Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol 8, R162. DOI |
30 | Xia Q, Zhou Z, Lu C, Cheng D, Dai F et al. (2004) A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306, 1937-1940. DOI |
31 | Xiang H, Li X, Dai F, Xu X, Tan A, Chen L et al. (2013) Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication. BMC genomics 14, 646. DOI |
32 | Zhao Q, Han MJ, Sun W, Zhang Z (2014) Copy number variations among silkworms. BMC genomics 15, 251-259. DOI |
33 | Xuan J, Yu Y, Qing T, Guo L, Shi L (2013) Next-generation sequencing in the clinic: promises and challenges. Cancer Lett 340, 284-295. DOI |
34 | Yang J, Wang X, Tang S, Shen Z, Wu J (2015) Peptidoglycan Recognition Protein S2 From Silkworm Integument: Characterization, Microbe-Induced Expression, and Involvement in the Immune-Deficiency Pathway. J Insect Sci 15. |