| 1 |
Abravaya K, Huff J, Marshall R, Merchant B, Mullen CS, Chneider G, Robinson J (2003) Molecular beacons as diagnostic tools: technology and applications. Clin Chem Lab Med 41, 468-47
DOI
ScienceOn
|
| 2 |
Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P, Nordborg M (2005) Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genetics 1, 531-539
|
| 3 |
Cheng TC, Xia QY, Qian JF, Liu Y, Zha XF, Xiang ZH (2004) Mining single nucleotide polymorphism from EST data of silkworm, Bombyx mori, inbred strain Dazo. Insect Biochem Mol Biol 34, 523-530
DOI
ScienceOn
|
| 4 |
Gage LP (1974). The Bombyx mori genome: analysis by DNA reassociation kinentics. Chromosoma 45, 27-42
PUBMED
|
| 5 |
Griffin TJ, Smith LM (2000) Single-nucleotide polymorphism analysis by MALDI–OF mass spectrometry. TIBTECH 18, 77-84
DOI
ScienceOn
|
| 6 |
Mahendran B, Padhi BK, Ghosh SK, Kundu SC (2006) Genetic variation in ecoraces of tropical tasar silkworm, Antherae mylitta D. using RFLF technique. Curr Sci 90, 100-103
|
| 7 |
Myers S, Bottolo L, Freeman C, McVean G, Donnelly P (2005) A fine-scale map of recombination rates and hotspots across the human genome. Science 310, 321-324
DOI
PUBMED
ScienceOn
|
| 8 |
Olivier M (2005) The Invader assay for SNP genotyping. Mutat Res 573, 103-110
DOI
PUBMED
ScienceOn
|
| 9 |
Rapley R, Harbron S (2004) Molecular Analysis and Genome Discovery. Chichester. John Wiley & Sons Ltd
|
| 10 |
Reich DE, Gabriel SB, Altshuler D (2003) Quality and completeness of SNP databases. Nat Genet 33, 457-458
DOI
ScienceOn
|
| 11 |
Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928-933
DOI
PUBMED
ScienceOn
|
| 12 |
Schneider K, Weisshar B, Borchardt DC, Salamini F (2001) SNP frequency and allelic haplotype structure of Beta vulagris expressed genes. Mol Breed 8, 63-74
DOI
ScienceOn
|
| 13 |
Taillon-Miller P, Gu ZJ, Li Q, Hillier L, Kwok PY (1998) Overlapping genomic sequences: a treasure trove of single nucleotide polymorphisms. Genome Res 8, 748-754
DOI
PUBMED
|
| 14 |
Tan YD, Wan C, Zhu Y, Lu C, Xiang Z, Deng HW (2001) An amplified fragment length polymorphism map of the silkworm. Genetics 157, 1277-1284
PUBMED
|
| 15 |
Vijayan K, Chatterjee SN, Nair CV (2005) Molecular characterization of mulberry genetic resources indigenous to India. Genet Resour Crop Evol 52, 77-86
DOI
ScienceOn
|
| 16 |
Vijayan K (2007) Molecular markers and their application in mulberry breeding. Int J Indust Entomol 15, 145-156
|
| 17 |
Karas M, Hillenkamp F (1988) Laser desorption ionization of proteins with molecular masses exceeding 10000 daltons. Anal Chem 60, 2299-2303
DOI
ScienceOn
|
| 18 |
Yasukochi Y, Ashakumary LA, Baba K, Yoshido A, Sahara K (2006) A second generation integrated map of the silkworm reveals synteny and conserved gene order between lepidopteran insects. Genetics 173, 1319-1328
DOI
ScienceOn
|
| 19 |
Lipshutz RJ, Fodor SPA, Gingeras TR, Lockhart DJ (1999) High density synthetic oligonucleotide arrays. Nat Genet 21, 20-24
DOI
PUBMED
ScienceOn
|
| 20 |
Newton CR (1991) Genetic analysis in cystic fibrosis using the amplification refractory mutation system (ARMS): the J3.11 MspI polymorphism. J Med Genet 28, 248-251
DOI
PUBMED
|
| 21 |
Chatterjee SN, Mohandas TP (2003) Identification of ISSR markers associated with productivity traits in silkworm, Bombyx mori L. Genome 46, 438-447
DOI
ScienceOn
|
| 22 |
Reddy KD, Nagaraju J, Abraham EG (1999a) Genetic characterization of silkworm Bombyx mori by simple sequence repeats (SSR) – anchored PCR. Heredity 83, 681-687
DOI
ScienceOn
|
| 23 |
Wang DG (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082
DOI
PUBMED
ScienceOn
|
| 24 |
Chatterjee SN, Nagaraja GM, Srivastava PP, Naik G (2004a) Morphological and molecular variation of Morus laevigata in India. Genetica 39, 1612-1624
DOI
ScienceOn
|
| 25 |
Chatterjee SN, Vijayan K, Roy GC, Nair CV (2004b) ISSR profiling of genetic variability in the ecotypes of Antheraea mylitta Drury, the tropical tasar silkworm. Russ J Genetics 40, 21-217
DOI
|
| 26 |
Promboon A, Shimada T, Fujisawa H, Kobayashi M (1995) Linkage map of random amplified polymorphic DNAs (RAPDs) in the silkworm, Bombyx mori. Genet Res Camb 66, 1-7
DOI
ScienceOn
|
| 27 |
Tyrka M et al. (2004) Developement of single nucleotide polymorphism marker of the wheat Lr1 leaf rust resistance gene. Cell Mol Biol Lett 9, 879-889
|
| 28 |
Hudson RR (2001) Two-locus sampling distributions and their application. Genetics 159, 1805-1817
PUBMED
|
| 29 |
Kruglyak L (1997) The use of genetic map of biallelic markers in linkage studies. Nat Genet 17, 21-24
DOI
PUBMED
ScienceOn
|
| 30 |
Yamamoto K, Narukawa J, Kadono-Okuda K, Nohata J, Sasanuma YM, Suetsugu Y, Banno Y, Fujii H, Goldsmith MR, Mita K (2008) A BAC-based integrated linkage map of the silkworm, Bombyx mori. Genome Biol 9, R21
DOI
PUBMED
ScienceOn
|
| 31 |
Cardon LR, Bell JI (2001) Association study designs for complex diseases. Nat Rev Genet 2, 91-99
DOI
ScienceOn
|
| 32 |
Halushka MK, Fan JB, Bentley K, Hsie L, Shen N, Shen N, Weder A, Cooper R, Lipshutz R, Chakravarti A (1999) Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis. Nat Genet 22, 239-247
DOI
ScienceOn
|
| 33 |
Jorde JB (2000) Linkage disequilibrium and the search for complex disease gene. Genome Res 10, 1435-1444
DOI
PUBMED
ScienceOn
|
| 34 |
MacDonald B, Linde C (2002) Pathogen population genetics, evolutionary potential and durable resistance. Ann Rev Phytopathol 40, 349-379
DOI
ScienceOn
|
| 35 |
Vijayan K, Anuradha HJ, Nair CV, Pradeep AR, Awasthi AK, Saratchandra B, Rahman SAS, Singh KC, Chakraborti R, Raje Urs S (2006) Genetic diversity and differentiation among populations of the Indian eri silkworm, Samia cynthia ricini, revealed by ISSR markers. J Insect Sci 6, 30
|
| 36 |
Nagaraja GM, Nagaraju J (1995) Genome fingerprinting in silkworm Bombyx mori using random arbitrary primers. Electrophoresis 16, 1633-1638
DOI
ScienceOn
|
| 37 |
Van K, Hwang EY, Kim MY, Park HJ, Lee SH, Cregan PB (2005) Discovery of SNPs in soybean phenotypes frequently used as the parents of mapping populations in the United States and Korea. J Heridity 96, 529-535
DOI
ScienceOn
|
| 38 |
Costabile M, Quach A, Ferrante A (2006) Molecular approaches in the diagnosis of primary immunodeficiency diseases. Hum Mutat 27, 1163-73
DOI
ScienceOn
|
| 39 |
Asakura N (2001) Single nucleotide polymorphism in an STS region linked to the Ncc-Tmp1A locusare informative for characterizing the differentiation of Chromosome 1A in wheat. Genes Genet Syst 76, 295-304
DOI
ScienceOn
|
| 40 |
Carlson CS, Eberle MA, Rieder MJ, Smith JD, Kruglyak L, Nickerson DA (2003) Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans. Nature Genet 33, 518-521
DOI
ScienceOn
|
| 41 |
McVean GA (2002) A genealogical interpretation of linkage disequilibrium. Genetics 162, 987-991
PUBMED
|
| 42 |
Kota R, Rudd S, Facius A, Kolesov G, Theil T, Zhang H, Stein N, Mayer K, Graner A (2003) Snipping polymorphism from large EST collections in barley (Hordeum vulagre L.). Mol Gen Genomics 270, 24-33
DOI
ScienceOn
|
| 43 |
Shi J, Heckel DG, Goldsmith MR (1995) A genetic linkage map for the domesticated silkworm, Bombyx mori, based on restriction fragment length polymorphisms. Genet Res 66, 109-126
DOI
ScienceOn
|
| 44 |
Begun DJ, Aquadro CF (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356, 519-520
DOI
ScienceOn
|
| 45 |
Kimiko Y, Junko N, Keiko KO, Junko N, Motoe S, Yoshitaka S, Yutaka B, Hiroshi F, Goldsmith MR, Kazuei M (2006) Construction of a single nucleotide polymorphism linkage map for the silkworm , Bombyx mori, based on BAC endsequences. Genetics 173, 151-161
DOI
ScienceOn
|
| 46 |
Sethuraman BN, Mohandas TP, Chatterjee SN (2002) DNA fingerprinting with homologous multilocus probes and search for DNA markers associated with yield attributes in silkworm, Bombyx mori. Eur J Entomol 99, 267-276
DOI
|
| 47 |
Teotia RS, Sen SK (1994) Mulberry diseases in India and their control. Sericologia 34, 1-18
|
| 48 |
Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7, 256-276
DOI
PUBMED
ScienceOn
|
| 49 |
Zhao W, Pan Y (2004) Genetic diversity of genus Morus revealed by RAPD markers in China. Int J Agric Biol 6, 950-954
|
| 50 |
Gupta PK, Roy JK, Prasad M (2001) Single nucleotide polymorphism: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr Sci 80, 524-535
|
| 51 |
Arunkumar KP, Kifayathullah L, Nagaraju J (2008b) Microsatellite markers for the Indian golden silkmoth, Antheraea assama (Saturniidae: Lepidoptera). Mol Ecol Resour (doi: 10.1111/j.1755-0998.2008.02414.x)
DOI
ScienceOn
|
| 52 |
Flint-Garcia SA, Thornsberry JM, Buckler ES (2003) Structure of linkage disequilibrium in plants. Annu Rev Plant Biol 54, 357-374
DOI
PUBMED
|
| 53 |
Howell W, Jobs M, Gyllensten U, Brookes A (1999) Dynamic allele-specific hybridization. A new method for scoring single nucleotide polymorphisms. Nat Biotechnol. 17, 87-88
DOI
ScienceOn
|
| 54 |
Nagaraja GM, Mahesh G, Satish V, Madhu M, Muthulakshmi M, Nagaraju J (2005) Genetic mapping of Z chromosome and identification of W chromosome-specific markers in the silkworm, Bombyx mori. Heredity 95, 148-157
DOI
ScienceOn
|
| 55 |
Rao SN, Muthulakshmi M, Kanginakudru S, Nagaraju J (2004) Phylogenetic relationships of three new microsporidian isolates from the silkworm, Bombyx mori. J Invertebr Pathol 86, 87-95
DOI
ScienceOn
|
| 56 |
Tyagi S, Bratu DP, Kramer FR (1998) Multicolor molecular beacons for allele discrimination. Nat Biotechnol 16, 49-53
DOI
ScienceOn
|
| 57 |
Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J (2008a) WildSilkbase: An EST database of wild silkmoths. BMC Genomics 9, 338
DOI
PUBMED
ScienceOn
|
| 58 |
Venkateswarlu M, Raje Urs S, Nath BS, Shashidhar HE, Maheswaran M, Veeraiah TM, Sabitha MG (2006) A first genetic linkage map of mulberry (Morus spp.) using RAPD, ISSR, and SSR markers and pseudotestcross mapping strategy. Tree Genet Genomes 3, 15-24
DOI
ScienceOn
|
| 59 |
Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116, 153-159
PUBMED
|
| 60 |
Ahmadian A, Gharizadeh B, O'Meara D, Odeberg J, Lundeberg J (2001) Genotyping by apyrase-mediated allele-specific extension. Nucl Acids Res 29, 1-21
DOI
PUBMED
ScienceOn
|
| 61 |
Kirpekar F, Nordhoff E, Larsen LK, Kristainsen K, Roepstroff P, Hillemkamp F (1998) DNA sequence analysis by MALDI mass spectrometry. Nucl Acids Res 26, 2554-2559
DOI
ScienceOn
|
| 62 |
McGuigan FE, Ralston SH (2002) Single nucleotide polymorphism detection: allelic discrimination using TaqMan. Psychiatr Genet 12, 133-136
DOI
ScienceOn
|
| 63 |
Miao X et al. (2006) Simple sequence repeat-based consensus linkage map of Bombyx mori. Proc Natl Acad Sci USA 102, 16303-16308
DOI
ScienceOn
|
| 64 |
Sharma A, Sharma R, Machii H (2000) Assessment of genetic diversity in a Morus germplasm collection using fluorescence-based AFLP markers. Theor Appl Genet 101, 1049-1055
DOI
ScienceOn
|
| 65 |
Rao SN, Nath BS, Saratchandra B (2005) Characterization and phylogenetic relationships among microsporidia infecting silkworm, Bombyx mori, using inter simple sequence repeat (ISSR) and small subunit rRNA (SSU-rRNA) sequence analysis. Genome 48, 355-366
DOI
ScienceOn
|
| 66 |
Rieder MJ, Taylor SL, Tobe VO, Nickerson DA (1998) Automating the identification of DNA variations using qualitybased fluorescence re-sequencing: analysis of the human mitochondrial genome. Nucl Acids Res 26, 967-973
DOI
ScienceOn
|
| 67 |
Ronaghi M, Uhlen M, Nyren P (1998) A sequencing method based on real-time pyrophosphate. Science 281, 363-365
DOI
PUBMED
ScienceOn
|
| 68 |
Vijayan K, Kar PK, Tikader A, Srivastava PP, Awasthi AK, Thangavelu K, Saratchandra B (2004) Molecular evaluation of genetic variability in wild populations of mulberry (Morus serrata Roxb.). Plant Breed 123, 568-572
DOI
ScienceOn
|
| 69 |
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8, 186-194
DOI
PUBMED
|
| 70 |
Kadono-Okuda K, Kosegawa E, Mase K, Hara W (2002) Linkage analysis of maternal EST cDNA clones covering all twenty-eight chromosomes in the silkworm, Bombyx mori . Insect Mol Biol 11, 443-451
DOI
ScienceOn
|
| 71 |
Lal S, Ravi V, Khurana JP, Khurana P (2008) Repertoire of leaf expressed sequence tags (ESTs) and partial characterization of stress-related and membrane transporter genes from mulberry (Morus indica L.). Tree Genet Genome (In press)
DOI
|
| 72 |
Kar PK, Vijayan K, Nair CV, Mohandas TP, Saratchandra B, Thangavalu K (2005) Genetic variability and genetic structure of wild and semi-domestic populations of tasar silkworm (Antheraea mylitta) ecorace Daba as revealed through ISSR markers. Genetica 125, 173-183
DOI
ScienceOn
|
| 73 |
Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, Donaldson MA, Nickerson DA, Boyce-Jacino M (1999) Mining SNPs from EST databases. Genome Res 9, 167-174
PUBMED
|
| 74 |
Syvanen AC (2001) Accessing genetic variation: genotyping single nucleotide polymorphisms. Nat Rev Genet 2, 930-942
DOI
ScienceOn
|
| 75 |
Mase K, Iizuka T, Yamamoto T, Okada E, Hara WH (2007) Genetic mapping of a food preference gene in the silkworm, Bombyx mori, using restriction fragment length polymorphism (RFLPs). Genes Genet Syst 82, 249-256
DOI
ScienceOn
|
| 76 |
Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler ES (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci USA 98, 11479-11484
DOI
ScienceOn
|
| 77 |
Reddy KD, Abraham EG, Nagaraju J (1999b) Microsatellites of the silkworm, Bombyx mori: abundance, polymorphism and strain characterization. Genome 42, 1057-1065
DOI
PUBMED
|
| 78 |
Ching A, Caldwell KS, Jung M, Dolan M, Smith OS, Tingey S, Morgante M, Rafalski AJ (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet 3, 19
DOI
PUBMED
|
| 79 |
Collins FS, Guyer MS, Chravarti A (1997) Variations on a theme: Cataloging human DNA sequence variation. Science 128, 1580-1581
DOI
ScienceOn
|
| 80 |
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8, 175-185
DOI
PUBMED
|
| 81 |
Nguu EK, Kadono-Okuda K, Mase K, Kosegawa E, Hara W (2005) Molecular linkage map for the silkworm, Bombyx mori, based on restriction fragment length polymorphism of cDNA clones. J Insect Biotechnol Sericol 74, 5-13
|
| 82 |
Prasad MD et al. (2005) Survey and analysis of microsatellites in the silkworm, Bombyx mori: frequency, distribution, mutations, marker potential and their conservation in heterologous species. Genetics 169, 197-214
DOI
ScienceOn
|
webmaster
