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Inter Simple Sequence Repeat (ISSR) Polymorphism and Its Application in Mulberry Genome Analysis  

Vijayan Kunjupillai (SeriBiotech Research Laboratory, Central Silk Board, Kodathi)
Publication Information
International Journal of Industrial Entomology and Biomaterials / v.10, no.2, 2005 , pp. 79-86 More about this Journal
Abstract
Molecular markers have increasingly been used in plant genetic analysis, due to their obvious advantages over conventional phenotypic markers, as they are highly polymorphic, more in number, stable across different developmental stages, neutral to selection and least influenced by environmental factors. Among the PCR based marker techniques, ISSR is one of the simplest and widely used techniques, which involves amplification of DNA segment present at an amplifiable distance in between two identical microsatellite repeat regions oriented in opposite direction. Though ISSR markers are dominant like RAPD, they are more stable and reproducible. Because of these properties ISSR markers have recently been found using extensively for finger printing, pohylogenetic analysis, population structure analysis, varietal/line identification, genetic mapping, marker-assisted selection, etc. In mulberry (Morus spp.), ISSR markers were used for analyzing phylogenetic relationship among cultivated varieties, between tropical and temperate mulberry, for solving the vexed problem of identifying taxonomic positions of genotypes, for identifying markers associated with leaf yield attributing characters. As ISSR markers are one of the cheapest and easiest marker systems with high efficiency in generating polymorphism among closely related varieties, they would play a major role in mulberry genome analysis in the future.
Keywords
Molecular markers; PCR; Primers; Genetic diversity; Phylogenetic relationship;
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