Effect of single nucleotide polymorphisms on intramuscular fat content in Hungarian Simmental cattle |
Anton, Istvan
(NARIC-Research Institute for Animal Breeding Nutrition and Meat Science)
Huth, Balazs (Department of Animal Husbandry and Management, Institute of Animal Science, Faculty of Agricultural and Environmental Sciences, University of Kaposvar) Fuller, Imre (Association of Hungarian Simmental Cattle Breeders) Rozsa, Laszlo (NARIC-Research Institute for Animal Breeding Nutrition and Meat Science) Hollo, Gabriella (Department of Animal Husbandry and Management, Institute of Animal Science, Faculty of Agricultural and Environmental Sciences, University of Kaposvar) Zsolnai, Attila (NARIC-Research Institute for Animal Breeding Nutrition and Meat Science) |
1 | Widmann P, Reverter A, Weikard R, et al. Systems biology analysis merging phenotype, metabolomic and genomic data identifies Non-SMC Condensin I Complex, Subunit G (NCAPG) and cellular maintenance processes as major contributors to genetic variability in bovine feed efficiency. PLoS One 2015; 10:E0124574. DOI |
2 | Lindholm-Perry AK, Kuehn LA, Oliver WT, et al. Adipose and muscle tissue gene expression of two genes (NCAPG and LCORL) located in a chromosomal region associated with cattle feed intake and gain. PLoS One 2013;8:E80882. DOI |
3 | Hesse D, Radloff K, Jaschke A, et al. Hepatic trans-Golgi action coordinated by the GTPase ARFRP1 is crucial for lipoprotein lipidation and assembly. J Lipid Res 2014;55:41-52. DOI |
4 | Hatzirodos N, Hummitzsch K, Irving-Rodgers HF, et al. Transcriptome profiling of granulosa cells from bovine ovarian follicles during atresia. BMC Genomics 2014;15:40. DOI |
5 | Wadelin FR, Fulton J, Collins HM, et al. PRAME is a golgitargeted protein that associates with the Elongin BC complex and is upregulated by interferon-gamma and bacterial PAMPs. PLoS One 2013:8:e58052. DOI |
6 | Anton I, Kovacs K, Fesus L, et al. Effect of DGAT1 and TG gene polymorphism on intramuscular fat and milk production traits in different cattle breeds in Hungary. Acta Vet Hung 2008;56:181-6. DOI |
7 | Anton I, Zsolnai A, Hollo I, Repa I, Hollo G. Effect of thyroglobulin gene polymorphism on the intramuscular fat content in cattle examined by x-ray computed tomography and Soxhlet methods. Arch Anim Breed 2013;56:593-6. DOI |
8 | Nayeri S, Sargolzaei M, Abo-Ismail MK, et al. Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle. BMC Genet 2016;17:75. |
9 | Allais S, Leveziel H, Hocquette JF, et al. Fine mapping of quantitative trait loci underlying sensory meat quality traits in three French beef cattle breeds. J Anim Sci 2014;92:4329-41. DOI |
10 | Picard B, Jurie C, Duris MP, Renand G. Consequences of selection for higher growth rate on muscle fibre development in cattle. Livest Sci 2006;102:107-20. DOI |
11 | Soxhlet F. Die gewichtsanalytische Bestimmung des Milchfettes. Dinglers Polytech J 1879;232:461-5. |
12 | Turner SD. qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. biorXiv https:/doi.org/10.1101/005165 DOI |
13 | Segura V, Vihjalmsson BJ, Platt A, et al. An efficient multilocus mixed-model approach for genome-wide association studies in structured populations. Nat Genet 2012;44:825-30. DOI |
14 | Ashburner M, Ball CA, Blake JA, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000;25:25-9. DOI |
15 | Bard F, Chia J. Cracking the glycome encoder: signaling, trafficking, and glycosylation. Trends Cell Biol 2016;26:379-388. DOI |
16 | Huth B, Hollo I, Fuller I, Polgar JP, Komlosi I. Breeding and selection strategy in Hungarian Simmental cattle. Hungarian J Anim Prod 2013;62:384-97. |
17 | Hocquette JF, Gondret F, Baeza E, et al. Intramuscular fat content in meat-producing animals: development, genetic and nutritional control, and identification of putative markers. Animal 2010;4:303-19. DOI |
18 | Mir PS, Schwartzkopf-Genswein KS, Entz T, et al. Effect of a short duration feed withdrawal followed by full feeding on marbling fat in beef carcasses. Livest Sci 2008;116:22-9. DOI |
19 | Jurie C, Picard B, Hocquette JF, et al. Muscle and meat quality characteristics of Holstein and Salers cull cows. Meat Sci 2007; 77:459-66. DOI |
20 | Khetarpal SA, Schjoldager KT, Christoffersen C, et al. Loss of function of GALNT2 lowers high-density lipoproteins in humans, nonhuman primates, and rodents. Cell Metab 2016; 24:234-45. DOI |
21 | Wang G, Padmanabhan S, Miyamoto-Mikami E, et al. GWAS of elite Jamaican, African American and Japanese sprint athletes. Med Sci Sports Exerc 2014;46:596-8. |
22 | Schjoldager KT, Vester-Christensen MB, Bennett EP, et al. O-glycosylation modulates proprotein convertase activation of angiopoietin-like protein 3: possible role of polypeptide GalNAc-transferase-2 in regulation of concentrations of plasma lipids. J Biol Chem 2010;285:36293-303. DOI |
23 | Schjoldager KT, Vakhrushev SY, Kong Y, et al. Probing isoformspecific functions of polypeptide GalNActransferases using zinc finger nuclease glycoengineered. SimpleCells. Proc Natl Acad Sci USA 2012;109:9893-8. DOI |
24 | Sjoelinder M, Uhlmann J, Ponstingl H. Characterisation of an evolutionary conserved protein interacting with the putative guanine nucleotide exchange factor DelGEF and modulating secretion. Exp Cell Res 2004;294:68-76. DOI |
25 | Zheng X, Ju Z, Wang J, et al. Single nucleotide polymorphisms, haplotypes and combined genotypes of LAP3 gene in bovine and their association with milk production traits. Mol Biol Rep 2011;38:4053-61. DOI |
26 | Long JZ, Svensson KJ, Tsai L, et al. A smooth muscle-like origin for beige adipocytes. Cell Metab 2014;19:810-20. DOI |
27 | Hoashi S, Hinenoya T, Tanaka A, et al. Association between fatty acid compositions and genotypes of FABP4 and LXRalpha in Japanese Black cattle. BMC Genet 2008;9:84. |
28 | Zhang W, Li J, Guo Y, et al. Multi-strategy genome-wide association studies identify the DCAF16-NCAPG region as a susceptibility locus for average daily gain in cattle. Sci Rep 2016;6:38073. DOI |
29 | Lia H, Chenga J, Wua W, et al. SRSF10 regulates alternative splicing and is required for adipocyte differentiation. Mol Cell Biol 2014:34:2198-207. DOI |
30 | Vernia S, Edwards YJ, Han MS, et al. An alternative splicing program promotes adipose tissue thermogenesis. Elife 2016:5:e17672. DOI |
31 | Narukami T, Sasazaki S, Oyama K, et al. Effect of DNA polymorphisms related to fatty acid composition in adipose tissue of Holstein cattle. Anim Sci J 2011;82:406-11. DOI |
32 | Barton L, Bures D, Kott T, Rehak D. Associations of polymorphisms in bovine DGAT1, FABP4, FASN, and PPARGC1A genes with intramuscular fat content and the fatty acid composition of muscle and subcutaneous fat in Fleckvieh bulls. Meat Sci 2016;114:18-23. DOI |
33 | Anton I, Kovacs K, Hollo G, et al. Effect of leptin, DGAT1 and TG gene polymorphisms on the intramuscular fat of Angus cattle in Hungary. Livest Sci 2011;135:300-3. DOI |
34 | Koohmaraie M, Kent MP, Shackelford SD, Veiseth E, Wheele TL. Meat tenderness and muscle growth: is there any relationship? Meat Sci 2002;62:345-52. DOI |
35 | Thompson JM. The effect of marbling on flavour and juiciness scores of cooked beef, after adjusting to a constant tenderness. Aust J Exp Agric 2004;44:645-52. DOI |
36 | Cho S, Park TS, Yoon DH, et al. Identification of genetic polymorphisms in FABP3 and FABP4 and putative association with back fat thickness in Korean native cattle. BMB Rep 2008; 41:29-34. DOI |
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