Comparison of microbial communities in swine manure at various temperatures and storage times |
Lim, Joung-Soo
(Animal Environment Division, National Institute of Animal Science, RDA)
Yang, Seung Hak (Hanwoo Research Institute, National Institute of Animal Science, RDA) Kim, Bong-Soo (Department of Life Science, Hallym University) Lee, Eun Young (Department of Environmental and Energy Engineering, The University of Suwon) |
1 | Peu P, Brugere H, Pourcher A-M, et al. Dynamics of a pig slurry microbial community during anaerobic storage and management. Appl Environ Microbiol 2006;72:3578-85. DOI |
2 | Okabe S, Shimazu Y. Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity. Appl Microbiol Biotechnol 2007;76:935-44. DOI |
3 | Gourmelon M, Caprais MP, Segura R, et al. Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in French estuaries. Appl Environ Microbiol 2007;73:4857-66. DOI |
4 | Pieper R, Janczyk P, Zeyner A, et al. Ecophysiology of the developing total bacterial and Lactobacillus communities in the terminal small intestine of weaning piglets. Microb Ecol 2008;56:474-83. DOI |
5 | Hur M, Kim Y, Song HR, et al. Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings. Appl Environ Microbiol 2011;77:7611-9. DOI |
6 | Kim BS, Kim JN, Yoon SH, et al. Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis. Anaerobe 2012;18:310-20. DOI |
7 | Eddy SR. Accelerated profile HMM searches. PLoS Comput Biol 2011;7:e1002195. DOI |
8 | Kim OS, Cho YJ, Lee K, et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716-21. DOI |
9 | Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera dectection. Bioinformatics 2011;27:2194-200. DOI |
10 | Schloss PD, Westcott SL, Ryabin T, et al. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009;75:7537-41. DOI |
11 | Tallon P, Magajna B, Lofranco C, et al. Microbial indicators of fecal contamination in water: a current perspective. Water Air Soil Pollut 2005;166:139-66. DOI |
12 | Hamady M, Lozupone C, Knight R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 2010;4:17-27. DOI |
13 | Andrew FS. Rarefraction curves. In: Kotz S, Campbell B, Balakrishnan N, Vidakovic B, editors. Encyclopedia of Statistical Science. New York, USA: John Wiley & Sons, New York, USA; 2006. |
14 | Haakensen M, Dobson CM, Deneer H, et al. Real-time PCR detection of bacteria belonging to the Firmicutes phylum. Int J Food Microbiol 2008;125:236-41. DOI |
15 | Kator H, Rhodes MW. Microbial and chemical indicators. In: Hackney C, Pierson M, editors. Environmental indicators and shellfish safety. New York, USA and London, UK: Chapman and Hall Publishers; 1994. pp. 30-91. |
16 | World Health Organization. Guidelines for drinking water quality, second ed., vol. 2, Health criteria and other supporting information. Geneva, Switzerland: World Health Organization; 1996. |
17 | Marti R, Dabert P, Pourcher A-M. Pig manure contamination marker selection based on the influence of biological treatment on the dominant fecal microbial groups. Appl Environ Microbiol 2009;75:4967-74. DOI |
18 | Marti R, Dabert P, Ziebal C, et al. Evaluation of Lactobacillus sobrius/L. amylovorus as a new microbial marker of pig manure. Appl Environ Microbiol 2010;76:1456-61. DOI |
19 | Kim WJ. Improvement of livestock odor through livestock manure recycling project. In: Fall Conference of the Korean Society of Odor Research and Engineering 2017, 2017 Nov 23-24; Lee Tae-seok Memorial Hall, Inje University, Gimhae, Korea: Korean Society of Odor Research and Engineering; 2017. pp. 44-56. |
20 | Peu P, Brugere H, Pourcher A-M, et al. Dynamics of a pig slurry microbial community during anaerobic storage and management. Appl Environ Microbiol 2006;72:3578-85. DOI |
21 | Jensen BB. Possible ways of modifying type and amount of products from microbial fermentation in the gut. In: Piva A, Bach Knudsen KE, Lindberg J-E, editors. Gut environment of pigs. Loughborough, UK: Nottingham University Press; 2001. pp. 181-200. |
22 | Mackie RI, Stroot PG, Varel VH. Biochemical identification and biological origin of key odor components in livestock waste. J Anim Sci 1998;76:1331-42. DOI |
23 | Switzenbaum MS, Giraldo-Gomez E, Hickey RF. Monitoring of the anaerobic methane fermentation process. Enzyme Microb Technol 1990;12:722-30. DOI |
24 | Miller DN, Varel VH. Swine manure composition affects the biochemical origins, composition, and accumulation of odorous compounds. J Anim Sci 2003;81:2131-8. DOI |
25 | Clark RM, Geldreich EE, Fox KR, et al. Tracking a Salmonella serovar typhimurium outbreak in Gideon, Missouri: role of contaminant propagation modelling. J Water Supply Res Technol 1996;45:171-83. |
26 | Hurst CJ, Crawford RL, Knudsen GR, et al. Manual of environmental microbiology, second ed. Washington, DC, USA: ASM Press; 2002. |
27 | Zhang D, Yuan X, Guo P, et al. Microbial population dynamics and changes in main nutrients during the acidification process of pig manures. J Environ Sci (China) 2011;23:497-505. DOI |
28 | Munch B, Errebo Larsen H, Aalbaeck B. Experimental studies on the survival of pathogenic and indicator bacteria in aerated and non-aerated cattle and pig slurry. Biol Wastes 1987;22:49-65. DOI |