Molecular Phylogenetic Diversity and Spatial Distribution of Bacterial Communities in Cooling Stage during Swine Manure Composting |
Guo, Yan
(College of Life Science, Shangqiu Normal University)
Zhang, Jinliang (College of Life Science, Shangqiu Normal University) Yan, Yongfeng (College of Life Science, Shangqiu Normal University) Wu, Jian (Department of Basci Veterinary Medicine, College of Veterinary Medicine, Huazhong Agricultural University) Zhu, Nengwu (The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters of Ministry of Education, College of Environmental Science and Engineering, South China University of Technology) Deng, Changyan (Ministry of Agriculture Key Laboratory of Swine Breeding and Genetics, College of Animal Science and Technology, Huazhong Agricultural University) |
1 | Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Mol. Biol. Rev. 59:143-169. |
2 |
Beffa, T., M. Blanc, P. F. Lyon, G. Vogt, M. Marchiani, J. L. Fischer, and M. Aragno. 1996. Isolation of Thermus strains from hot composts (60 to |
3 | Blanc, M., L. Marilley, T. Beffa, and M. Aragno. 1999. Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods. FEMS Microbiol. Ecol. 28:141-149. DOI |
4 | Cho, K. M., S. M. Lee, R. K. Math, S. M. Islam, D. M. Kambiranda, J. M. Kim, M. G. Yun, J. J. Cho, J. O. Kim, Y. H. Lee, H. Kim, and H. D. Yun. 2008. Culture-independent analysis of microbial succession during composting of Swine slurry and mushroom cultural wastes. J. Microbiol. Biotechnol. 18:1874-1883. |
5 | Dees, P. M. and W. C. Ghiorse. 2001. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol. Ecol. 35:207-216. DOI |
6 | Dojka, M. A., P. Hugenholtz, S. K. Haack, and N. R. Pace. 1998. Microbial diversity in a hydrocarbon- and chlorinated-solventcontaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 64:3869-3877. |
7 | Drury, B., E. Rosi-Marshall, and J. J. Kelly. 2013. Wastewater treatment effluent reduces the abundance and diversity of benthic bacterial communities in urban and suburban rivers. Appl. Environ. Microbiol. 79:1897-1905. DOI ScienceOn |
8 | Guo, Y., N. Zhu, S. Zhu, and C. Deng. 2007. Molecular phylogenetic diversity of bacteria and its spatial distribution in composts. J. Appl. Microbiol. 103:1344-1354. DOI ScienceOn |
9 | Holben, W. E. 1994. Isolation and purification of bacterial DNA from soil. In: Methods of Soil Analysis, Part 2. Microbiological and Biochemical Properties (Eds. R. W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, and A. Wollum), pp. 727-751. Soil Science Society of America, Madison, WI, USA. |
10 | Lane, D. J. 1991. 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematics (Eds. E. Stackebrandt and M. Goodfellow), pp. 115-175. Wiley, New York, NY, USA. |
11 | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, second ed. Cold spring harbor laboratory press, New York, USA. |
12 | Lu, X. M., P. Z. Lu, and H. Zhang. 2014. Bacterial communities in manures of piglets and adult pigs bred with different feeds revealed by 16S rDNA 454 pyrosequencing. Appl. Microbiol. Biotechnol. 98:2657-2665. DOI ScienceOn |
13 | Maeda, K., D. Hanajima, R. Morioka, and T. Osada. 2010. Characterization and spatial distribution of bacterial communities within passively aerated cattle manure composting piles. Bioresour. Technol. 101:9631-9637. DOI ScienceOn |
14 | Neher, D. A., T. R. Weicht, S. T. Bates, J. W. Leff, and N. Fierer. 2013. Changes in bacterial and fungal communities across compost recipes, preparation methods, and composting times. PLoS One. 8(11):e79512. DOI |
15 | Swofford, D. L. 1999. PAUP: Phylogenetic Analysis Using Parsimony, Version 4.0. Illinois Natural History Survey, Champaign, IL, USA. |
16 | Torsvik, V., R. Sorheim, and J. Goksoyr. 1996. Total diversity in soil and sediment communities-A review. J. Ind. Microbiol. 17:170-178. DOI |
17 | Ward, D. M., M. M. Bateson, R. Weller, and A. L. Ruff-Roberts. 1992. Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microb. Ecol. 12:219-226. DOI |
18 | Yi, J., H. Y. Wu, J. Wu, C. Y. Deng, R. Zheng, and Z. Chao. 2012a. Molecular phylogenetic diversity of Bacillus community and its temporal-spatial distribution during the swine manure of composting. Appl. Microbiol. Biotechnol. 93:411-421. DOI ScienceOn |
19 | Yi, J., R. Zheng, F. E. Li, Z. Chao, C. Y. Deng, and J. Wu. 2012b. Temporal and spatial distribution of Bacillus and Clostridium histolyticum in swine manure composting by fluorescent in situ hybridization (FISH). Appl. Microbiol. Biotechnol. 93:2625-2632. DOI |
20 | Zhu, N., C. Deng, Y. Xiong, and H. Qian. 2004. Performance characteristics of three aeration systems in the swine manure composting. Bioresour. Technol. 95:319-326. DOI ScienceOn |
21 | Zhu, N., C. Deng, Y. Xiong, and W. Tang. 2003. Design and operational effect of time/temperature-based aeration control system for aerobic composting. Trans. CSAE. 19:282-286. |
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