Single Nucleotide Polymorphisms of NLRP12 Gene and Association with Non-specific Digestive Disorder in Rabbit |
Liu, Yun-Fu
(Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus)
Zhang, Gong-Wei (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Xiao, Zheng-Long (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Yang, Yu (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Deng, Xiao-Song (Sichuan Center of Green Food Development) Chen, Shi-Yi (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Wang, Jie (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Lai, Song-Jia (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) |
1 | Rochambeau, H. De., D. Licois, T. Gidenne, S. Verdelhan, P. Coudert, and J. M. Elsen. 2006. Genetic variability of the resistance for three types of enteropathy in the growing rabbit. Livest. Sci. 101: 110-115. DOI ScienceOn |
2 | Dewree, R., L. Meulemans, C. Lassence, D. Desmecht, R. Ducatelle, J. Mast, and D. Licois. 2007. Experimentally induced epizootic rabbit enteropathy: clinical, histopathological, ultrastructural, bacteriological and haematological findings. World Rabbit Sci. 15:91-102. |
3 | Elinav, E., T. Strowig, A. L. Kau, J. Henao-Mejia, C. A. Thaiss, C. J. Booth, D. R. Peaper, J. Bertin, S. C. Eisenbarth, and J. I. Gordon. 2011. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell 145:745-757. DOI ScienceOn |
4 | Hayashi, K.. 1991. PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA. Genome Res. 1: 34-38. DOI ScienceOn |
5 | Hayashi, K.. 1992. PCR-SSCP: a method for detection of mutations. Genet. Anal.: Biomol. Eng. 9:73-79. DOI ScienceOn |
6 | Hugot, J. P., M. Chamaillard, H. Zouali, S. Lesage, J. P. Cezard, J. Belaiche, S. Almer, C. Tysk, C. A. O'Morain, and M. Gassull. 2001. Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease. Nature 411:599-603. DOI ScienceOn |
7 | Jeru, I., G. Le Borgne, E. Cochet, H. Hayrapetyan, P. Duquesnoy, G. Grateau, A. Morali, T. Sarkisian, and S. Amselem. 2011. Identification and functional consequences of a recurrent NLRP12 missense mutation in periodic fever syndromes. Arthritis Rheum. 63:1459-1464. DOI ScienceOn |
8 | Janeway, C. A. Jr, and R. Medzhitov. 2002. Innate immune recognition. Annu. Rev. Immunol. 20:197-216. DOI ScienceOn |
9 | Jeru, I., P. Duquesnoy, T. Fernandes-Alnemri, E. Cochet, J. W. Yu, M. Lackmy-Port-Lis, E. Grimprel, J. Landman-Parker, V. Hentgen, and S. Marlin. 2008. Mutations in NALP12 cause hereditary periodic fever syndromes. Proc. Natl. Acad. Sci. 105:1614-1619. DOI ScienceOn |
10 | Tang, H., T. Quertermous, B. Rodriguez, S. L. R. Kardia, X. Zhu, A. Brown, J. S. Pankow, M. A. Province, S. C. Hunt, and E. Boerwinkle. 2005. Genetic structure, self-identified race/ ethnicity, and confounding in case-control association studies. Am. J. Hum. Genet. 76:268-275. DOI ScienceOn |
11 | Thomas, P. D., M. J. Campbell, A. Kejariwal, H. Mi, B. Karlak, R. Daverman, K. Diemer, A. Muruganujan, and A. Narechania. 2003. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res. 13:2129-2141. DOI ScienceOn |
12 | Thomas, P. D. and A. Kejariwal. 2004. Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: evolutionary evidence for differences in molecular effects. Proc. Natl. Acad. Sci. USA. 101:15398-15403. DOI ScienceOn |
13 | Wang, L., G. A. Manji, J. M. Grenier, A. Al-Garawi, S. Merriam, J. M. Lora, B. J. Geddes, M. Briskin, P. S. DiStefano, and J. Bertin. 2002. PYPAF7, a novel PYRIN-containing Apaf1-like protein that regulates activation of NF- and caspase-1-dependent cytokine processing. J. Biol. Chem. 277:29874-29880. DOI ScienceOn |
14 | Wigginton, J. E., D. J. Cutler and G. R. Abecasis. 2005. A note on exact tests of Hardy-Weinberg equilibrium. Am. J. Hum. Genet. 76:887-893. DOI ScienceOn |
15 | Williams, K. L., J. D. Lich, J. A. Duncan, W. Reed, P. Rallabhandi, C. Moore, S. Kurtz, V. M. N. Coffield, M. A. Accavitti-Loper, and L. Su. 2005. The CATERPILLER protein Monarch-1 is an antagonist of Toll-like receptor-, tumor necrosis factor -, and Mycobacterium tuberculosis-induced pro-inflammatory signals. J. Biol. Chem. 280:39914-39924. DOI ScienceOn |
16 | Williams, K. L., D. J. Taxman, M. W. Linhoff, W. Reed, and J. P. Y. Ting. 2003. Cutting edge: Monarch-1: a pyrin/nucleotide-binding domain/leucine-rich repeat protein that controls classical and nonclassical MHC class I genes. J. Immunol. 170:5354-5358. DOI |
17 | Carvalho, F. A, I. Nalbantoglu, J. D. Aitken, R. Uchiyama, Y. Su, G. H. Doho, M. Vijay-Kumar, and A. T. Gewirtz. 2012. Cytosolic flagellin receptor NLRC4 protects mice against mucosal and systemic challenges. Mucosal Immunol. 5:288-298. DOI ScienceOn |
18 | Allen, I. C., J. E. Wilson, M. Schneider, J. D. Lich, R. A. Roberts, J. C. Arthur, R. M. T. Woodford, B. K. Davis, J. M. Uronis, and H. H. Herfarth. 2012. NLRP12 suppresses colon inflammation and tumorigenesis through the negative regulation of noncanonical NF- signaling. Immunity 36: 742-754. DOI ScienceOn |
19 | Arthur, J. C., J. D. Lich, Z. Ye, I. C. Allen, D. Gris, J. E. Wilson, M. Schneider, K. E. Roney, B. P. O'Connor, and C. B. Moore. 2010. Cutting edge: NLRP12 controls dendritic and myeloid cell migration to affect contact hypersensitivity. J. Immunol. 185:4515-4519. DOI |
20 | Bennegadi, N., T. Gidenne, and D. Licois. 2001. Impact of fibre deficiency and sanitary status on non-specific enteropathy of the growing rabbit. Anim. Res. 50:401-414. DOI ScienceOn |
21 | Livak, K. J. and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the method. Methods 25:402-408. DOI ScienceOn |
22 | Khare, S., A. Dorfleutner, N. B. Bryan, C. Yun, A. D. Radian, L. de Almeida, Y. Rojanasakul, and C. Stehlik. 2012. An NLRP7-containing inflammasome mediates recognition of microbial lipopeptides in human macrophages. Immunity 36:464-476. DOI ScienceOn |
23 | Lich, J. D., K. L. Williams, C. B. Moore, J. C. Arthur, B. K. Davis, D. J. Taxman and J. P. Y. Ting. 2007. Cutting edge: Monarch-1 suppresses non-canonical NF- activation and p52-dependent chemokine expression in monocytes. J. Immunol. 178:1256-1260. DOI |
24 | Licois, D. 2004. Domestic rabbit enteropathies. Proceedings of the eighth world rabbit congress. pp. 385-403. |
25 | Macaluso, F., M. Nothnagel, Q. Parwez, E. Petrasch‐Parwez, F. G. Bechara, J. T. Epplen and S. Hoffjan. 2007. Polymorphisms in NACHT‐LRR (NLR) genes in atopic dermatitis. Exp. Dermatol. 16:692-698. DOI ScienceOn |
26 | Hasan Zaki Md., Peter Vogel, R. K. Malireddi, M. Body-Malapel, P. K. Anand, J. Bertin, D. R. Green, M. Lamkanfi, and T. D. Kanneganti. 2011. The NOD-like receptor NLRP12 attenuates colon inflammation and tumorigenesis. Cancer Cell 20:649-660. DOI ScienceOn |
27 | Ogura, Y., D. K. Bonen, N. Inohara, D. L. Nicolae, F. F. Chen, R. Ramos, H. Britton, T. Moran, R. Karaliuskas and R. H. Duerr. 2001. A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature 411:603-606. DOI ScienceOn |
28 | Richards, N., P. Schaner, A. Diaz, J. Stuckey, E. Shelden, A. Wadhwa and D. L. Gumucio. 2001. Interaction between pyrin and the apoptotic speck protein (ASC) modulates ASC-induced apoptosis. J. Biol. Chem. 276:39320-39329. DOI ScienceOn |
29 | Sole, X., E. Guino, J. Valls, R. Iniesta, and V. Moreno. 2006. SNPStats: a web tool for the analysis of association studies. Bioinformatics 22:1928-1929. DOI ScienceOn |
30 | Ye, Z., J. D. Lich, C. B. Moore, J. A. Duncan, K. L. Williams, and J. P. Y. Ting. 2008. ATP binding by monarch-1/NLRP12 is critical for its inhibitory function. Mol. Cell. Biol. 28:1841-1850. DOI ScienceOn |
31 | Ye, Z. and J. P. Y. Ting. 2008. NLR, the nucleotide-binding domain leucine-rich repeat containing gene family. Curr. Opin. Immunol. 20:3-9. DOI ScienceOn |
32 | Zhang, G. W., H. Z. Wang, S. Y. Chen, Z. C. Li, W. X. Zhang, and S. J. Lai. 2011. A reduced incidence of digestive disorders in rabbits is associated with allelic diversity at the TLR4 locus. Vet. Immunol. Immunopathol. 144:482-486. DOI ScienceOn |
33 | Zhang, W. X., G. W. Zhang, J. Peng, J. L. Zhang, Y. Yang, and S. J. Lai. 2013. A synonymous mutation in NOD2 gene was significantly associated with non-specific digestive disorder in rabbit. Gene 516:193-197. DOI ScienceOn |