Identification and Association of SNPs in TBC1D1 Gene with Growth Traits in Two Rabbit Breeds |
Yang, Zhi-Juan
(Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus)
Fu, Lu (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Zhang, Gong-Wei (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Yang, Yu (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Chen, Shi-Yi (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Wang, Jie (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) Lai, Song-Jia (Institute of Animal Genetics and Breeding, Sichuan Agricultural University, Chengdu Campus) |
1 | Andersson, L. 2001. Genetic dissection of phenotypic diversity in farm animals. Nat. Rev. Genet. 2:130-138. DOI ScienceOn |
2 | Botstein, D., R. L. White, M. Skolnick, and R. W. Davis. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32:314-331. |
3 | Chadt, A., K. Leicht, A. Deshmukh, L.Q. Jiang, S. Scherneck, U. Bernhardt, T. Dreja, H. Vogel, K. Schmolz, R. Kluge, J. R. Zierath, C. Hultschig, R. C. Hoeben, A. Schurmann, and H. Alhasani. 2008. Tbc1d1 mutation in lean mouse strain confers leanness and protects from diet-induced obesity. Nat. Genet. 40:1354-1359. DOI ScienceOn |
4 | Crofford, O. B. and C. K. Davis Jr. 1965. Growth characteristics, glucose tolerance and insulin sensitivity of New Zealand obese mice. Metabolism 14:271-280. DOI ScienceOn |
5 | Darwin, C. 2009. On the origin of species: by means of natural selection, or the preservation of favored races in the struggle for life. 2nd edition. Valde Books, New York, New York. |
6 | Felber, J. and A. Golay. 2002. Pathways from obesity to diabetes. International journal of obesity and related metabolic disorders: journal of the International Association for the Study of Obesity. 26:S39-S45. DOI ScienceOn |
7 | Fontanesi, L., M. Colombo, L. Tognazzi, E. Scotti, L. Buttazzoni, S. Dall'Olio, R. Davoli, and V. Russo. 2011. The porcine TBC1D1 gene: mapping, SNP identification, and association study with meat, carcass and production traits in Italian heavy pigs. Mol. Biol. Rep. 38:1425-1431. DOI |
8 | Funai, K. and G. D. Cartee. 2009. Inhibition of contraction-stimulated AMP-activated protein kinase inhibits contraction-stimulated increases in PAS-TBC1D1 and glucose transport without altering PAS-AS160 in rat skeletal muscle. Diabetes 58:1096-1104. DOI ScienceOn |
9 | Garritano, S., F. Gemignani, C. Voegele, T. Nguyen-Dumont, F. L. Calvez-Kelm, D. D. Silva, F. Lesueur, S. Landi, and S. V. Tavtigian. 2009. Determining the effectiveness of high resolution melting analysis for SNP genotyping and mutation scanning at the TP53 locus. BMC Genet. 10:5. DOI ScienceOn |
10 | Gu, X., C. Feng, L. Ma, C. Song, Y. Wang, Y. Da, H. Li, K. Chen, S. Ye, C. Ge, X. Hu, and N. Li. 2011. Genome-wide association study of body weight in chicken F2 resource population. PlOS ONE 6:e21872. DOI |
11 | Ishiki, M. and A. Klip. 2005. Minireview: recent developments in the regulation of glucose transporter-4 traffic: new signals, locations, and partners. Endocrinology 146:5071-5078. DOI ScienceOn |
12 | Kahn, B. B. and J. S. Flier. 2000. Obesity and insulin resistance. J. Clin. Invest. 106:473-481. DOI ScienceOn |
13 | Letunic, I., T. Doerks, and P. Bork. 2009. SMART 6: recent updates and new developments. Nucl. Acids Res. 37:D229-D232. DOI ScienceOn |
14 | Marchler-Bauer, A., A. R. Panchenko, B. A. Shoemaker, P. A. Thiessen, L. Y. Geer, and S. H. Bryant. 2013. CDD: conserved domains and protein three-dimensional structure. Nucl. Acids Res. 41(D1):D348-D352. DOI |
15 | Martino, A., T. Mancuso, and A. M. Rossi. 2010. Application of high-resolution melting to large-scale, high-throughput SNP genotyping A comparison with the TaqMan. method. J. Biomol. Screen 15:623-629. DOI ScienceOn |
16 | Raz, I., R. Eldor, S. Cernea, and E. Shafrir. 2005. Diabetes: insulin resistance and derangements in lipid metabolism. Cure through intervention in fat transport and storage. Diabetes/Metabolism Res. Rev. 21:3-14. DOI ScienceOn |
17 | Meyre, D., M. Farge, C. Lecoeur, C. Proenca, E. Durand, F. Allegaert, J. Tichet, M. Marre, B. Balkau, J. Weill, J. Delplanque, and P. Froguel. 2008. R125W coding variant in TBC1D1 confers risk for familial obesity and contributes to linkage on chromosome 4p14 in the French population. Hum. Mol. Genet. 17:1798-1802. DOI ScienceOn |
18 | Montgomery, J., C. T. Wittwer, R. Palais, and L. Zhou. 2007. Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis. Nat. Protoc. 2:59-66. DOI ScienceOn |
19 | Nguyen.Dumont, T., F. L. Calvez.Kelm, N. Forey, S. McKay-Chopin, S. Garritano, L. Gioia-Patricola, D. D. Silva, R. Weigel, S. Sangrajrang, F. Lesueur, and S. V. Tavtigian. 2009. Description and validation of high.throughput simultaneous genotyping and mutation scanning by high.resolution melting curve analysis. Hum. Mutat. 30:884-890. DOI ScienceOn |
20 | Rubin, C.-J., M. C. Zody, J. Eriksson, J. R. S. Meadows, E. Sherwood, M. T. Webster, L. Jiang, M. Ingman, T. Sharpe, S. Ka, F. Hallook, F. Besnier, O. Carlborg, B. Bed'hom, M. Tixier-Boichard, P. Jensen, P. Siegel, K. Lindblad-Toh, and L. Andersson. 2010. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464:587-591. DOI ScienceOn |
21 | Sakamoto, K. and G. D. Holman. 2008. Emerging role for AS160/TBC1D4 and TBC1D1 in the regulation of GLUT4 traffic. Am. J. Physiol-Endocrinol. Metab. 295:E29-E37. DOI ScienceOn |
22 | Sauna, Z. E. and C. Kimchi-Sarfaty. 2011. Understanding the contribution of synonmous mutations to human disease. Nat. Rev. Genet. 12:683-691. DOI ScienceOn |
23 | Schaid, D. J. and S. J. Jacobsen. 1999. Blased tests of association: comparisons of allele frequencies when departing from hardy-weinberg proportions. Am. J. Epidemiol. 149:706-711. DOI ScienceOn |
24 | West, D. B., C. N. Boozer, D. L. Moody, and R. L. Atkinson. 1992. Dietary obesity in nine inbred mouse strains. Am. J. Physiol-Regul. Inetgr. Comp. Physiol. 262:R1025-R1032. |
25 | Stone, S., V. Abkevich, D. L. Russell, R. Riley, K. Timms, T. Tran, D. Trem, D. Frank, S. Jammulapati, C. D. Neff, D. Lliev, R. Gress, G. He, G. C. Frech, T. D. Adams, M. H. Skolnick, J. S. Lanchbury, A. Gutin, S. C. Hunt, and D. Shattuck. 2006. TBC1D1 is a candidate for a severe obesity gene and evidence for a gene/gene interaction in obesity predisposition. Hum. Mol. Genet. 15:2709-2720. DOI ScienceOn |
26 | Taylor, E. B., D. An, H. F. Kramer, H. Yu, N. L. Fujii, K. S. C. Roeckl, N. Bowles, M. F. Hirshman, J. Xie, E. P. Feener, and L. J. Goodyear. 2008. Discovery of TBC1D1 as an insulin-, AICAR-, and contraction-stimulated signaling nexus in mouse skeletal muscle. J. Biol. Chem. 283:9787-9796. DOI ScienceOn |
27 | Watson, R. T., M. Kanzaki, and J. E. Pessin. 2004. Regulated membrane trafficking of the insulin-responsive glucose transporter 4 in adipocytes. Endocrinol. Rev. 25:177-204. DOI ScienceOn |
28 | Will, E. and D. Gallwitz. 2001. Biochemical characterization of Gyp6p, a Ypt/Rab-specific GTPase-activating protein from yeast. J. Biol. Chem. 276:12135-12139. DOI ScienceOn |
29 | Wittwer, C. T., G. H. Reed, C. N. Gundry, J. G. Vandersteen, and R. J. Pryor. 2003. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin. Chem. 49:853-860. DOI ScienceOn |
30 | Wuschke, S., S. Dahm, C. Schmidt, H.G. Joost, and H. Al-Hasani. 2006. A meta-analysis of quantitative trait loci associated with body weight and adiposity in mice. Int. J. Obes. 31:829-841. |
31 | Yaich, L., J. Ooi, M. Park, J. P. Borg, C. Landry, R. Bodmer, and B. Margolis. 1998. Functional analysis of the Numb phosphotyrosine-binding domain using site-directed mutagenesis. J. Biol. Chem. 273:10381-10388. DOI ScienceOn |
32 | Yan, K. S., M. Kuti, and M. M. Zhou. 2002. PTB or not PTB.that is the question. FEBS Lett. 513:67-70. DOI ScienceOn |
33 | Zhou, Q. L., Z. Y. Jiang, J. Holik, A. Chawla, G. N. Hagan, J. Leszyk, and M. P. Czech. 2008. Akt substrate TBC1D1 regulates GLUT1 expression through the mTOR pathway in 3T3-L1 adipocytes. Biochem. J. 411:647-655. DOI ScienceOn |
34 | Zaid, H., C. Antonescu, V. Randhawa, and A. Klip-Biochem. 2008. Insulin action on glucose transporters through molecular switches, tracks and tethers. Biochem. J. 413:201-215. DOI ScienceOn |
35 | Zhang, G. W., H. Z. Wang, S. Y. Chen, Z. C. Li, W. X. Zhang, and S. J. Lai. 2011. A reduced incidence of digestive disorders in rabbits is associated with allelic diversity at the TLR4 locus. Vet. Immunol. Immunop. 144:482-486. DOI ScienceOn |
36 | Zhou, M.-M., K. S. Ravichandran, E. T. Olejniczak, A. M. Petros, R. P. Meadows, M. Sattler, J. E. Harlan, W. S. Wade, S. J. Burakoff, and S. W. Fesik. 1995. Structure and ligand recognition of the phosphotyrosine binding domain of Shc. Nature 378:584-592. DOI ScienceOn |
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