Identification of Functional and In silico Positional Differentially Expressed Genes in the Livers of High- and Low-marbled Hanwoo Steers
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Lee, Seung-Hwan
(Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA)
Park, Eung-Woo (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) Cho, Yong-Min (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) Yoon, Duhak (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) Park, Jun-Hyung (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) Hong, Seong-Koo (Nutrition & Physiology Division, National Institute of Animal Science, RDA) Im, Seok-Ki (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) Thompson, J.M. (The Cooperative Research Centre for Beef Genetic Technologies, The University of New England) Oh, Sung-Jong (Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA) |
1 | Florini, J. R., D. Z. Ewton and S. A. Coolican. 1996. Growth hormone and the insulin-like growth factor system in myogenesis. Endocr. Rev. 17:481-517 |
2 | Fernando, M.-S., S. Wilkens and J. J. Garcia. 2005. Structure of dimeric mitochondrial ATP synthase: novel F0 bridging features and the structural basis of mitochondrial cristae biogenesis. Proc. Natl. Acad. Sci. USA. 102:12356-12358 DOI ScienceOn |
3 | Briles, W. E. 1954. Evidence of overdominance of the B blood group alleles in the chicken. Genet. 39:961-965 |
4 | Childs, K. D., D. W. Goad, M. F. Allan, D. Pomp, C. Krehbiel, R. D. Geisert, J. B. Morgan and J. R. Malayer. 2002. Differential expression of NAT1 translational repressor during development of bovine intramuscular adipocytes. Physiol. Genomics 10:49-56 DOI |
5 | USDA. 1989. Official united states standards for grades of beef carcases. Agric. Marketing Serv. USDA, Washington, DC |
6 | Lee, H. G., H. Hidari, S. K Kang, Z. S. Hong, C. X. Xu, S. H. Kim, K. S. Seo, D. H. Yoon and Y. J. Choi. 2005. The relationships between plasma insulin-like growth factor (IGF)-1 and IGFbinding proteins (IGFBPs) to growth pattern, and characteristics of plasma IGFBPs in steers. Asian-Aust. J. Anim. Sci. 18(11):1575-1581 DOI |
7 | Ponsuksili, S., E. Murani, K. Schellander, M. Schwerin and K. Wimmers. 2005. Identification of functional candidate genes for body composition by expression analyses and evidencing impact by association analysis and mapping. Biochimica et Biophysica Acta 1730:31-40 DOI ScienceOn |
8 | Wimmers, K., S. Mekchay, K. Schellander and S. Ponsuksili. 2003. Molecular characterization of the pig C3 gene and its association with complement activity. Immunogenetics. 54: 714-724 |
9 | Simpson, E., G. Bulfield, M. Brenan, W. Fitzpatrick, C. Hetherington and A. Blann. 1982. H-2 associated differences in replocated strains of mice divergently selected for body weight. Immunogenetics 15:63-70 DOI |
10 | Kim, J. H., B. H Choi, H. T. Lim, E. W. Park, S. H. Lee, B. Y. Seo, I. C. Cho, J. G. Lee, S. J. Oh and J. T. Jeon. 2005. Characterization of phosphoinositide-3-kinase, class 3 (PIK3C3) gene and association tests with quantitative traits in pigs. Asian-Aust. J. Anim. Sci. 18:1701-1707 DOI |
11 | Wang, Y. H., A. B. Keren, A. Reverter, G. S. Harper, M. Taniguchi, S. M. McWilliam, H. Mannen, K. Oyama and S. A. Lehnert. 2005. Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mamm. Genome. 16:201-210 DOI ScienceOn |
12 | JMGA. 1988. New beef carcass grading standards. Japan Meat Grading Association, Tokyo, Japan |
13 | Jones, J. I. and D. R. Clemmons. 1995. Insulin-like growth factor binding protein: biological action. Endocr. Rev. 16(1):3-34 |
14 | Jung, Y. C., M. F. Rothchild, M. P. Flanagan, L. Christian and C. M. Warner. 1989. Association of restriction fragment length polymorphisms of swine leukocyte antigen class I genes with production traits of Duroc and Hampshire boars. Anim. Genet. 20(1):79-91 DOI ScienceOn |
15 | Kappes, S. M., J. W. Keele, R. T. Stone, R. A. McGraw, T. S. Sonstegard, T. P. Smith, N. L. Lopez-Corrales and C. W. Beattie. 1997. A second-generation linkage map of the bovine genome. Genome. Res. 7(3):235-249 DOI ScienceOn |
16 | Kim, Yun-Jee, Chae-iI Kwak, Young-Yun Gu, In-Taek Hwang and Jong-Yoon Chun. 2004. Annealing control primer system for identification of differentially expressed genes on agarose gels. BioTechniques 36:424-434 DOI |
17 | Lee, H. C., B. Tian, J. M. Sedivy, J. R. Wands and M. Kim. 2006. Loss of raf kinase inhibitor protein promotes cell proliferation and migration of human hepatoma cells. Gastroenterol. 131:1208-1217 DOI ScienceOn |
18 | Kim, J. Y., D. H. Yoon, B. L. Park, L. H. Kim, K. J. Na, J. G. Choi, C. Y. Cho, J. K. Lee, E. R. Chung, B. C. Sang, I. J. Cheong, S. J. Oh and H. D. Shin. 2005. Identification of novel SNPs in bovine insulin-like growth factor binding protein-3 (IGFBP3) gene. Asian-Aust. J. Anim. Sci. 18(1):3-7 과학기술학회마을 DOI |
19 | Nicoletti, V. G., V. M. Marino, C. Cuppari, D. Licciardello, D. Patti, V. S. Purrello and A. M. Stella. 2005. Effect of antioxidant diets on mitochondrial gene expression in rat brain during aging. Neurochem Res. 30:737-752 DOI ScienceOn |
20 | Min, J., S. Okada, M. Kanzaki, J. Elmendorf, K. Coker, B. Ceresa, L. Syu, Y. Noda, A. Saltiel and J. S. Pessin. 1999. A novel insulin-regulated syntaxin 4-binding protein mediating GLUT4 translocation in adipocytes. Molecular. Cell. 3:751-760 DOI ScienceOn |
21 | Chen, Q., S. Wang, S. N. Thompson, E. D. Hall and R. P. Guttmann. 2006. Identification and characterization of PEBP as a calpain substrate. J. Neurochem. 99:1133-1138 DOI ScienceOn |
22 | Gromada, J. C., K. Bark, A. M. Smidt, J. Efanov, S. A. Janson, D. Mandic, W. Webb, B. Zhang, A. Meister, Jeromin and P-O. Berggren. 2005. Neuronal calcium sensor-1 potentiates glucose-dependent exocytosis in pancreatic b cells through activation of phosphatidylinositol 4-kinase beta. Proc. Natl. Acad. Sci. USA. 102:10303-10308 DOI ScienceOn |
23 | Grum, D. E., J. K. Drackley and J. H. Clark. 2002. Fatty acid metabolism in liver of dairy cows fed supplemental fat and nicotinic acid during an entire lactation. J. Dairy Sci. 85:3026-3034 DOI ScienceOn |
24 | Gehrmann, T. and L. M. G. Heilmeyer. 1998. Phosphatidylinositol 4-kinases. Eur. J. Biochem. 253:357-370 DOI ScienceOn |
25 | Hwang, In-Tak, Yun-Jee Kim, Seung Hyun Kim, Chae-il Kwak, Young-Yun Gu and Jong-Yoon Chun. 2003. Annealing control primer system for improving specificity of PCR amplification. BioTechniques 35:1180-1184 |
26 | Hinokio, Y., S. Suzuki, K. Komatu, M. Ohtomo, M. Onoda, M. Matsumoto, S. Hirai, Y. Sato, H. Akai and K. Abe. 1995. A new mitochondrial DNA deletion associated with diabetic amyotrophy, diabetic myoatrophy and diabetic fatty liver. Muscle Nerve. 3:S142-149 |
27 | Altschul, S. F., W. Gish, W. Miller, E. W. Myers and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215(3):403-410 DOI |
28 | Hayward, B. E., J. A. Fantes, J. P. Warner, S. Intody, J. P. Leek, A. F. Markham and D. T. Bonthron. 1996. Co-localization of the ketohexokinase and glucokinase regulator genes to a 500-kb region of chromosome 2p23. Mamm Genome. 7:454-458 DOI ScienceOn |
29 | Kim, C. J. and E. S. Lee. 2003. Effects of quality grade on the chemical, physical and sensory characteristics of Hanwoo (Korean native cattle) beef. Meat Sci. 63:397-405 DOI ScienceOn |
30 | Bauchart, D. 1993. Lipid apsorption and transport in ruminants. J. Dairy Sci. 76:3864-3881 DOI ScienceOn |
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