Browse > Article

Mitochondrial Genetic Diversity and Phylogenetic Relationships of Siberian Flying Squirrel(Pteromys volans) Populations  

Lee, Mu-Yeong (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Park, Sun-Kyung (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Hong, Yoon-Jee (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Kim, Young-Jun (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Voloshina, Inna (Lazovsky State Nature Reserve)
Myslenkov, Alexander (Lazovsky State Nature Reserve)
Saveljev, Alexander P. (Russian Research Institute of Game Management and Fur Farming of RAAS)
Choi, Tae-Young (National Institute of Environmental Research)
Piao, Ren-Zhu (Wildlife Institute of Heilongjiang Province)
An, Jung-Hwa (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Lee, Mun-Han (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Lee, Hang (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Min, Mi-Sook (Conservation Genome Resource Bank for Korean Wildlife, BK21 program for Veterinary Science and College of Veterinary Medicine, Seoul National University)
Publication Information
Animal cells and systems / v.12, no.4, 2008 , pp. 269-277 More about this Journal
Abstract
Siberian flying squirrel, an endangered species in South Korea, is distributed through major mountain regions of South Korea. The number of Siberian flying squirrel(Pteromys volans) in South Korea has decreased and their habitats are fragmented and isolated because of anthropogenic activities. So far no molecular genetic data has, however, been available for their conservation and management. To obtain better information concerning genetic diversity and phylogenetic relationships of the Siberian flying squirrel in South Korea, we examined 14 individuals from South Korea, 7 individuals from Russia, and 5 individuals from northeastern China along with previously published 29 haplotypes for 1,140 bp of the mtDNA cytochrome b gene. The 14 new individuals from South Korea had 7 haplotypes which were not observed in the regions of Russia and Hokkaido. The level of genetic diversity(0.616%) in the South Korean population was lower than that in eastern Russia(0.950%). The geographical distribution of mtDNA haplotypes and reduced median network confirmed that there are three major lineages of Siberian flying squirrel, occupying; Far Eastern, northern Eurasia, and the island of Hokkaido. The South Korean population only slightly distinct from the Eurasia, and eastern Russian population, and is part of the lineage Far Eastern. Based on these, we suggest that the South Korean population could be considered to belong to one partial ESU(Far Eastern) of three partial ESUs but a different management unit. However, the conservation priorities should be reconfirmed by nuclear genetic marker and ecological data.
Keywords
Siberian flying squirrel; cytochrome b sequence variation; genetic diversity; Evolutionary significant unit(ESU);
Citations & Related Records

Times Cited By Web Of Science : 3  (Related Records In Web of Science)
Times Cited By SCOPUS : 1
연도 인용수 순위
1 Bowen BW (1998) What is wrong with ESUs?: The gap between evolutionary theory and conservation principles. J Shellfish Res 17: 1355-1358
2 Hong YJ (2005) Molecular Phyogenetics Study of Asiatic Black Besars (Ursus thibetanus) in Korea. College of Veterinary Medicine, Seoul National University, Seoul, pp 1-47
3 Moritz C (1994) Defining evolutionarily significant units for conservation. Trends Ecol Evol 9: 373-375   DOI   ScienceOn
4 Paulauskas A, Radzijevskaja J, and Namavieiute E (2006)
5 Won C and Smith KG (1999) History and current status of mammals of the Korean Peninsula. Mammal Review 29: 3-33   DOI   ScienceOn
6 Yoon MH, Han SH, Oh HS, and Kim JG (2004) The mammals of Korea. Dongbangmedia, Seoul, pp 111-113
7 Avise JC (2004) Molecular marker, natural history, and evolution. 2nd Ed. Sinauer Associates, Massachusetts, pp 1-684
8 Excoffier L, Laval G, and Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50
9 Allendorf FW and Luikart G (2007) Conservation and the Genetics of Populations. Blackwell Publishing, Oxford, pp 1- 642
10 Hanski IK, Stevens PC, Ihalempia P, and Selonen V (2000) Home-range size, movements, and nest-site use in the Siberian flying squirrel, Pteromys volans. J Mammal 81: 798-809   DOI   ScienceOn
11 Reunanen P, Nikula A, Monkko M, Hurme E, and Nivala V (2002) Predicting occupancy for the Siberian flying squirrel in old-growth forest patches. Ecol Appl 12: 1188-1198   DOI   ScienceOn
12 Rozas J, Sanchez-DelBarrio JC, Messeguer X, and Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497   DOI
13 Selonen V, Painter JN, and Hanski IK (2005) Microsatellite variation in the Siberian flying squirrel in Finland. Ann Zool Fenn 42: 505-511
14 Swofford DL (2001) PAUP*: Phylogenetic analysis using parsimony (and Other Methods) 4.0 Beta. Sinauer Associates, Massachusetts
15 Bandelt HJ, Forster P, and Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48   DOI   ScienceOn
16 Nowak RM (1999) Walker's Mammals of the World vol. 2. 6th Ed. Johns Hopkins University Press, Baltimore and London, pp 1247-1250
17 Painter JN, Selonen V, and Hanski IK (2004) Microsatellite loci for the Siberian flying squirrel, Pteromys volans. Mol Ecol Notes 4: 119-121   DOI   ScienceOn
18 Crandall KA, Bininda-Emonds ORR, Mace GM, and Wayne RK (2000) Considering evolutionary processes in conservation biology. Trends Ecol Evol 15: 290-295   DOI   ScienceOn
19 Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, and Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882
20 Timm U and Kiristaja P (2002) The Siberian flying squirrel (Pteromys volans L.) in Estonia. Acta Zool Litu 12: 433-436   DOI   ScienceOn
21 Tamura K, Dudley J, Nei M, and Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599   DOI   ScienceOn
22 Graus D and Li WH (2000) Fundamentals of Molecular Evolution. 2nd Ed. Sinauer Associates, Masschusetts, pp 57-59
23 De Guia APO and Saitoh T (2007) The gap between the concept and definitions in the Evolutionarily Significant Unit: The need to integrate neutral genetic variation and adaptive variation. Ecol Res 22: 604-612   DOI   ScienceOn
24 Iwasa MA, Kartavtseva IV, Dobrotvorsky AK, Panov VV, and Suzuki H (2002) Local differentiation of Clethrionomys rutilus in northeastern Asia inferred from mitochondrial gene sequences. Mamm Biol 67: 157-166   DOI   ScienceOn
25 Frankham R, Ballou JD, and Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge, pp 1-617
26 Lee MY, Lissovsky AA, Park SK, Obolenskaya EV, Dokuchaev NE, Zhang YP, Yu L, Kim YJ, Voloshina I, Myslenkov A, Choi TY, Min MS, and H Lee (2008) Mitochondrial cytochrome b sequence variations and population structure of Siberian chipmunk (Tamias sibiricus) in northeastern Asia and population substructure of the species in South Korea. Mol Cells In Press
27 Fraser DJ and Bernatchez L (2001) Adaptive evolutionary conservation: toward a unified concepts for defining conservation units. Mol Ecol 10: 2741-2752   DOI
28 Selonen V and Hanski IK (2004) Young flying squirrels (Pteromys volans) dispersing in fragmented forests. Behav Ecol 15: 564-571   DOI   ScienceOn
29 Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, and Wilson AC (1989) Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad. Sci USA 86: 6196-6200
30 Christopher N, Balakrishaan SL, Minfort AG, Lalji S, and Michael DS (2003) Phylogeography and conservation genetics of Eld's deer (Cervuseldi). Mol Ecol 12: 1-10   DOI   ScienceOn
31 Irwin DM, Kocher TD, and Wilson AC (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32: 128-144   DOI
32 Oshida T, Abramov A, Yanagawa H, and Masuda R (2005) Phylogeography of the Russian flying squirrel (Pteromys volans): Implication of refugia theory in arboreal small mammal of Eurasia. Mol Ecol 14: 1191-1196   DOI   ScienceOn
33 Selonen V and Hanski IK (2006) Habitat exploration and use in dispersing juvenile flying squirrels. J Anim Ecol 75: 1440-1449   DOI   ScienceOn
34 Tamura K and Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Bio Evol 10: 512-526
35 Hurme E, Reunanen P, Monkko M, Nikula A, Nivala V, and Oksanen J (2007) Local habitat patch pattern of the Siberian flying squirrel in a managed boreal forest landscape. Ecography 30: 277-287   DOI
36 Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791   DOI   ScienceOn
37 Yasuda SP, Vogel P, Tsuchiya K, Han SH, Lin LK, and Suzuki H (2005) Phylogeographic patterning of mtDNA in the widely distributed harvest mouse (Micromys minutus) suggests dramatic cycles of range con traction and expansion during the mid- to late Pleistocene. Can J Zool 83: 1411-1420   DOI   ScienceOn
38 Serizawa K, Suzuki H, Iwasa MA, Tsuchiya K, Pavlenko MV, Kartavtseva IV, Chelomina GN, Dokuchaev NE, and Han SH (2002) A spatial aspect on mitochondrial DNA genealogy in Apodemus peninsulae from East Asia. Biochem Genet 40: 149-161   DOI   ScienceOn
39 Goropashnaya AV, Fedorvo VB, Seifert B, and Pamilo P (2004) Limited phylogeographic structure across Eurasia in two red wood ant species Formica pratensis and F. lugubris (Hymenoptera, Formcidae). Mol Ecol 13: 1849-1858   DOI   ScienceOn
40 Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp Ser 41: 95-98