The Danger-Associated Peptide PEP1 Directs Cellular Reprogramming in the Arabidopsis Root Vascular System |
Dhar, Souvik
(School of Biological Sciences, College of Natural Science, Seoul National University)
Kim, Hyoujin (School of Biological Sciences, College of Natural Science, Seoul National University) Segonzac, Cecile (Department of Agriculture, Forestry and Bioresources, Seoul National University) Lee, Ji-Young (School of Biological Sciences, College of Natural Science, Seoul National University) |
1 | Chaiwanon, J., Wang, W., Zhu, J.Y., Oh, E., and Wang, Z.Y. (2016). Information integration and communication in plant growth regulation. Cell 164, 1257-1268. DOI |
2 | Kurihara, D., Mizuta, Y., Sato, Y., and Higashiyama, T. (2015). ClearSee: a rapid optical clearing reagent for whole-plant fluorescence imaging. Development 142, 4168-4179. DOI |
3 | Millet, Y.A., Danna, C.H., Clay, N.K., Songnuan, W., Simon, M.D., Werck-Reichhart, D., and Ausubel, F.M. (2010). Innate immune responses activated in Arabidopsis roots by microbe-associated molecular patterns. Plant Cell 22, 973-990. DOI |
4 | Abdul Malik, N.A., Kumar, I.S., and Nadarajah, K. (2020). Elicitor and receptor molecules: orchestrators of plant defense and immunity. Int. J. Mol. Sci. 21, 963. DOI |
5 | Aida, M., Beis, D., Heidstra, R., Willemsen, V., Blilou, I., Galinha, C., Nussaume, L., Noh, Y.S., Amasino, R., and Scheres, B. (2004). The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 119, 109-120. DOI |
6 | Bartels, S., Lori, M., Mbengue, M., van Verk, M., Klauser, D., Hander, T., Boni, R., Robatzek, S., and Boller, T. (2013). The family of Peps and their precursors in Arabidopsis: differential expression and localization but similar induction of pattern-triggered immune responses. J. Exp. Bot. 64, 5309-5321. DOI |
7 | Beck, M., Wyrsch, I., Strutt, J., Wimalasekera, R., Webb, A., Boller, T., and Robatzek, S. (2014). Expression patterns of FLAGELLIN SENSING 2 map to bacterial entry sites in plant shoots and roots. J. Exp. Bot. 65, 6487-6498. DOI |
8 | Bjornson, M., Pimprikar, P., Nurnberger, T., and Zipfel, C. (2021). The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity. Nat. Plants 7, 579-586. DOI |
9 | De Rybel, B., Mahonen, A.P., Helariutta, Y., and Weijers, D. (2016). Plant vascular development: from early specification to differentiation. Nat. Rev. Mol. Cell Biol. 17, 30-40. DOI |
10 | Dolan, L., Janmaat, K., Willemsen, V., Linstead, P., Poethig, S., Roberts, K., and Scheres, B. (1993). Cellular organisation of the Arabidopsis thaliana root. Development 119, 71-84. DOI |
11 | Imlau, A., Truernit, E., and Sauer, N. (1999). Cell-to-cell and long-distance trafficking of the green fluorescent protein in the phloem and symplastic unloading of the protein into sink tissues. Plant Cell 11, 309-322. DOI |
12 | Gimenez-Ibanez, S., Ntoukakis, V., and Rathjen, J.P. (2009). The LysM receptor kinase CERK1 mediates bacterial perception in Arabidopsis. Plant Signal. Behav. 4, 539-541. DOI |
13 | Hacquard, S., Spaepen, S., Garrido-Oter, R., and Schulze-Lefert, P. (2017). Interplay between innate immunity and the plant microbiota. Annu. Rev. Phytopathol. 55, 565-589. DOI |
14 | Huffaker, A., Pearce, G., and Ryan, C.A. (2006). An endogenous peptide signal in Arabidopsis activates components of the innate immune response. Proc. Natl. Acad. Sci. U. S. A. 103, 10098-10103. DOI |
15 | Jang, G., Chang, S.H., Um, T.Y., Lee, S., Kim, J.K., and Choi, Y.D. (2017). Antagonistic interaction between jasmonic acid and cytokinin in xylem development. Sci. Rep. 7, 10212. DOI |
16 | Jing, Y., Zheng, X., Zhang, D., Shen, N., Wang, Y., Yang, L., Fu, A., Shi, J., Zhao, F., Lan, W., et al. (2019). Danger-associated peptides interact with PIN-dependent local auxin distribution to inhibit root growth in Arabidopsis. Plant Cell 31, 1767-1787. DOI |
17 | Okada, K., Kubota, Y., Hirase, T., Otani, K., Goh, T., Hiruma, K., and Saijo, Y. (2021). Uncoupling root hair formation and defence activation from growth inhibition in response to damage-associated Pep peptides in Arabidopsis thaliana. New Phytol. 229, 2844-2858. DOI |
18 | Kim, H., Zhou, J., Kumar, D., Jang, G., Ryu, K.H., Sebastian, J., Miyashima, S., Helariutta, Y., and Lee, J.Y. (2020). SHORTROOT-mediated intercellular signals coordinate phloem development in Arabidopsis roots. Plant Cell 32, 1519-1535. DOI |
19 | Lee, J.Y., Colinas, J., Wang, J.Y., Mace, D., Ohler, U., and Benfey, P.N. (2006). Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc. Natl. Acad. Sci. U. S. A. 103, 6055-6060. DOI |
20 | Mahonen, A.P., Bishopp, A., Higuchi, M., Nieminen, K.M., Kinoshita, K., Tormakangas, K., Ikeda, Y., Oka, A., Kakimoto, T., and Helariutta, Y. (2006). Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development. Science 311, 94-98. DOI |
21 | Pascale, A., Proietti, S., Pantelides, I.S., and Stringlis, I.A. (2020). Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion. Front. Plant Sci. 10, 1741. DOI |
22 | Ramachandran, P., Augstein, F., Mazumdar, S., Van Nguyen, T., Minina, E.A., Melnyk, C.W., and Carlsbecker, A. (2021). Abscisic acid signaling activates distinct VND transcription factors to promote xylem differentiation in Arabidopsis. Curr. Biol. 31, 3153-3161.e5. DOI |
23 | Emonet, A., Zhou, F., Vacheron, J., Heiman, C.M., Tendon, V.D., Ma, K.W., Schulze-Lefert, P., Keel, C., and Geldner, N. (2021). Spatially restricted immune responses are required for maintaining root meristematic activity upon detection of bacteria. Curr. Biol. 31, 1012-1028.e7. DOI |
24 | Jang, G. and Choi, Y.D. (2018). Drought stress promotes xylem differentiation by modulating the interaction between cytokinin and jasmonic acid. Plant Signal. Behav. 13, e1451707. DOI |
25 | Poncini, L., Wyrsch, I., Denervaud Tendon, V., Vorley, T., Boller, T., Geldner, N., Metraux, J.P., and Lehmann, S. (2017). In roots of Arabidopsis thaliana, the damage-associated molecular pattern AtPep1 is a stronger elicitor of immune signalling than flg22 or the chitin heptamer. PLoS One 12, e0185808. DOI |
26 | Rich-Griffin, C., Eichmann, R., Reitz, M.U., Hermann, S., Woolley-Allen, K., Brown, P.E., Wiwatdirekkul, K., Esteban, E., Pasha, A., Kogel, K.H., et al. (2020). Regulation of cell type-specific immunity networks in Arabidopsis roots. Plant Cell 32, 2742-2762. DOI |
27 | Scheres, B. (2007). Stem-cell niches: nursery rhymes across kingdoms. Nat. Rev. Mol. Cell Biol. 8, 345-354. DOI |
28 | Sebastian, J., Ryu, K.H., Zhou, J., Tarkowska, D., Tarkowski, P., Cho, Y.H., Yoo, S.D., Kim, E.S., and Lee, J.Y. (2015). PHABULOSA controls the quiescent center-independent root meristem activities in Arabidopsis thaliana. PLoS Genet. 11, e1004973. DOI |
29 | Seo, M. and Lee, J.Y. (2021). Dissection of functional modules of AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4 in the development of the root xylem. Front. Plant Sci. 12, 632078. DOI |
30 | Smet, W., Sevilem, I., de Luis Balaguer, M.A., Wybouw, B., Mor, E., Miyashima, S., Blob, B., Roszak, P., Jacobs, T.B., Boekschoten, M., et al. (2019). DOF2. 1 controls cytokinin-dependent vascular cell proliferation downstream of TMO5/LHW. Curr. Biol. 29, 520-529.e6. DOI |
31 | Wendrich, J.R., Moller, B.K., Li, S., Saiga, S., Sozzani, R., Benfey, P.N., De Rybel, B., and Weijers, D. (2017). Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem. Proc. Natl. Acad. Sci. U. S. A. 114, E8922-E8929. DOI |
32 | Ye, L., Wang, X., Lyu, M., Siligato, R., Eswaran, G., Vainio, L., Blomster, T., Zhang, J., and Mahonen, A.P. (2021). Cytokinins initiate secondary growth in the Arabidopsis root through a set of LBD genes. Curr. Biol. 31, 3365-3373.e7. DOI |
33 | Nurnberger, T. and Kemmerling, B. (2018). Pathogen-associated molecular patterns (PAMP) and PAMP-triggered immunity. In Annual Plant Reviews Online, J.A. Roberts, ed. (Hoboken, NJ: John Wiley & Sons), https://doi.org/10.1002/9781119312994.apr0362 |
34 | Zhou, J., Wang, X., Lee, J.Y., and Lee, J.Y. (2013). Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning. Plant Cell 25, 187-201. DOI |
35 | Ramachandran, P., Augstein, F., Nguyen, V., and Carlsbecker, A. (2020). Coping with water limitation: hormones that modify plant root xylem development. Front. Plant Sci. 11, 570. DOI |
36 | Bartels, S. and Boller, T. (2015). Quo vadis, Pep? Plant elicitor peptides at the crossroads of immunity, stress, and development. J. Exp. Bot. 66, 5183-5193. DOI |
37 | Bishopp, A., Help, H., El-Showk, S., Weijers, D., Scheres, B., Friml, J., Benkova, E., Mahonen, A.P., and Helariutta, Y. (2011). A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots. Curr. Biol. 21, 917-926. DOI |
38 | De Coninck, B., Timmermans, P., Vos, C., Cammue, B.P.A., and Kazan, K. (2015). What lies beneath: belowground defense strategies in plants. Trends Plant Sci. 20, 91-101. DOI |
39 | Hou, S., Wang, X., Chen, D., Yang, X., Wang, M., Turra, D., Di Pietro, A., and Zhang, W. (2014). The secreted peptide PIP1 amplifies immunity through receptor-like kinase 7. PLoS Pathog. 10, e1004331. DOI |
40 | Ma, C., Guo, J., Kang, Y., Doman, K., Bryan, A.C., Tax, F.E., Yamaguchi, Y., and Qi, Z. (2014). AtPEPTIDE RECEPTOR2 mediates the AtPEPTIDE1-induced cytosolic Ca2+ rise, which is required for the suppression of Glutamine Dumper gene expression in Arabidopsis roots. J. Integr. Plant Biol. 56, 684-694. DOI |
41 | Perini, S., Mambro, R., and Sabatini, S. (2012). Growth and development of the root apical meristem. Curr. Opin. Plant Biol. 15, 17-23. DOI |
42 | Smetana, O., Makila, R., Lyu, M., Amiryousefi, A., Rodriguez, F.S., Wu, M.F., Sole-Gil, A., Gavarron, M.L., Siligato, R., Miyashima, S., et al. (2019). High levels of auxin signalling define the stem-cell organizer of the vascular cambium. Nature 565, 485-489. DOI |
43 | Stadler, R. and Sauer, N. (1996). The Arabidopsis thaliana AtSUC2 gene is specifically expressed in companion cells. Bot. Acta 109, 299-306. DOI |
44 | Seo, M., Kim, H., and Lee, J.Y. (2020). Information on the move: vascular tissue development in space and time during postembryonic root growth. Curr. Opin. Plant Biol. 57, 110-117. DOI |
45 | Yamaguchi, Y. and Huffaker, A. (2011). Endogenous peptide elicitors in higher plants. Curr. Opin. Plant Biol. 14, 351-357. DOI |
46 | Zhang, J., Eswaran, G., Alonso-Serra, J., Kucukoglu, M., Xiang, J., Yang, W., Elo, A., Nieminen, K., Damen, T., Joung, J.G., et al. (2019). Transcriptional regulatory framework for vascular cambium development in Arabidopsis roots. Nat. Plants 5, 1033-1042. DOI |
47 | Sarkar, A.K., Luijten, M., Miyashima, S., Lenhard, M., Hashimoto, T., Nakajima, K., Scheres, B., Heidstra, R., and Laux, T. (2007). Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature 446, 811-814. DOI |
48 | Zhou, F., Emonet, A., Tendon, V.D., Marhavy, P., Wu, D., Lahaye, T., and Geldner, N. (2020). Co-incidence of damage and microbial patterns controls localized immune responses in roots. Cell 180, 440-453.e18. DOI |
49 | Zipfel, C., Robatzek, S., Navarro, L., Oakeley, E.J., Jones, J.D.G., Felix, G., and Boller, T. (2004). Bacterial disease resistance in Arabidopsis through flagellin perception. Nature 428, 764-767. DOI |
50 | Aichinger, E., Kornet, N., Friedrich, T., and Laux, T. (2012). Plant stem cell niches. Annu. Rev. Plant Biol. 63, 615-636. DOI |
51 | Yamaguchi, Y., Huffaker, A., Bryan, A.C., Tax, F.E., and Ryan, C.A. (2010). PEPR2 is a second receptor for the Pep1 and Pep2 peptides and contributes to defense responses in Arabidopsis. Plant Cell 22, 508-522. DOI |
52 | Sevilem, I., Miyashima, S., and Helariutta, Y. (2013). Cell-to-cell communication via plasmodesmata in vascular plants. Cell Adh. Migr. 7, 27-32. DOI |
53 | Sabatini, S., Heidstra, R., Wildwater, M., and Scheres, B. (2003). SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem. Genes Dev. 17, 354-358. DOI |