1 |
Lee, S.R., Pratt, G.A., Martinez, F.J., Yeo, G.W., and Lykke-Andersen, J. (2015). Target discrimination in nonsense-mediated mRNA decay requires Upf1 ATPase activity. Mol. Cell 59, 413-425.
DOI
|
2 |
Lykke-Andersen, J., Shu, M.D., and Steitz, J.A. (2000). Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103, 1121-1131.
DOI
|
3 |
Maniatis, T. and Reed, R. (2002). An extensive network of coupling among gene expression machines. Nature 416, 499-506.
DOI
|
4 |
Manning, K.S. and Cooper, T.A. (2017). The roles of RNA processing in translating genotype to phenotype. Nat. Rev. Mol. Cell Biol. 18, 102-114.
DOI
|
5 |
Maquat, L.E. and Gong, C. (2009). Gene expression networks: competing mRNA decay pathways in mammalian cells. Biochem. Soc. Trans. 37, 1287-1292.
DOI
|
6 |
Azzalin, C.M. and Lingner, J. (2006). The human RNA surveillance factor UPF1 is required for S phase progression and genome stability. Curr. Biol. 16, 433-439.
DOI
|
7 |
Azzalin, C.M., Reichenbach, P., Khoriauli, L., Giulotto, E., and Lingner, J. (2007). Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science 318, 798-801.
DOI
|
8 |
Brugiolo, M., Botti, V., Liu, N., Muller-McNicoll, M., and Neugebauer, K.M. (2017). Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm. Nucleic Acids Res. 45, 10452-10465.
DOI
|
9 |
Chakrabarti, S., Jayachandran, U., Bonneau, F., Fiorini, F., Basquin, C., Domcke, S., Le Hir, H., and Conti, E. (2011). Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol. Cell 41, 693-703.
DOI
|
10 |
Chawla, R., Redon, S., Raftopoulou, C., Wischnewski, H., Gagos, S., and Azzalin, C.M. (2011). Human UPF1 interacts with TPP1 and telomerase and sustains telomere leading-strand replication. EMBO J. 30, 4047-4058.
DOI
|
11 |
Fiorini, F., Bagchi, D., Le Hir, H., and Croquette, V. (2015). Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities. Nat. Commun. 6, 7581.
DOI
|
12 |
Hurt, J.A., Robertson, A.D., and Burge, C.B. (2013). Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res. 23, 1636-1650.
DOI
|
13 |
Nicholson, P., Yepiskoposyan, H., Metze, S., Zamudio Orozco, R., Kleinschmidt, N., and Muhlemann, O. (2010). Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell. Mol. Life Sci. 67, 677-700.
DOI
|
14 |
Mendell, J.T., ap Rhys, C.M., and Dietz, H.C. (2002). Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts. Science 298, 419-422.
DOI
|
15 |
Moore, M.J. (2005). From birth to death: the complex lives of eukaryotic mRNAs. Science 309, 1514-1518.
DOI
|
16 |
Muhlemann, O. and Jensen, T.H. (2012). mRNP quality control goes regulatory. Trends Genet. 28, 70-77.
DOI
|
17 |
Aubol, B.E., Hailey, K.L., Fattet, L., Jennings, P.A., and Adams, J.A. (2017). Redirecting SR protein nuclear trafficking through an allosteric platform. J. Mol. Biol. 429, 2178-2191.
DOI
|
18 |
Ahn, S., Kim, J., and Hwang, J. (2013). CK2-mediated TEL2 phosphorylation augments nonsense-mediated mRNA decay (NMD) by increase of SMG1 stability. Biochim. Biophys. Acta 1829, 1047-1055.
DOI
|
19 |
Applequist, S.E., Selg, M., Raman, C., and Jack, H.M. (1997). Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein. Nucleic Acids Res. 25, 814-821.
DOI
|
20 |
Atkin, A.L., Altamura, N., Leeds, P., and Culbertson, M.R. (1995). The majority of yeast UPF1 co-localizes with polyribosomes in the cytoplasm. Mol. Biol. Cell 6, 611-625.
DOI
|
21 |
Aubol, B.E., Keshwani, M.M., Fattet, L., and Adams, J.A. (2018). Mobilization of a splicing factor through a nuclear kinase-kinase complex. Biochem. J. 475, 677-690.
DOI
|
22 |
Serin, G., Gersappe, A., Black, J.D., Aronoff, R., and Maquat, L.E. (2001). Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). Mol. Cell. Biol. 21, 209-223.
DOI
|
23 |
Hwang, J. and Kim, Y.K. (2013). When a ribosome encounters a premature termination codon. BMB Rep. 46, 9-16.
DOI
|
24 |
Isken, O. and Maquat, L.E. (2008). The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat. Rev. Genet. 9, 699-712.
DOI
|
25 |
Azzalin, C.M. (2012). UPF1: a leader at the end of chromosomes. Nucleus 3, 16-21.
DOI
|
26 |
Pal, M., Ishigaki, Y., Nagy, E., and Maquat, L.E. (2001). Evidence that phosphorylation of human Upf1 protein varies with intracellular location and is mediated by a wortmannin-sensitive and rapamycin-sensitive PI 3-kinase-related kinase signaling pathway. RNA 7, 5-15.
DOI
|
27 |
Robichaud, N. and Sonenberg, N. (2017). Translational control and the cancer cell response to stress. Curr. Opin. Cell Biol. 45, 102-109.
DOI
|
28 |
Singh, A.K., Choudhury, S.R., De, S., Zhang, J., Kissane, S., Dwivedi, V., Ramanathan, P., Petric, M., Orsini, L., Hebenstreit, D., et al. (2019). The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci. Elife 8, e41444.
DOI
|
29 |
Sobell, H.M. (1985). Actinomycin and DNA transcription. Proc. Natl. Acad. Sci. U. S. A. 82, 5328-5331.
DOI
|
30 |
Kamelgarn, M., Chen, J., Kuang, L., Jin, H., Kasarskis, E.J., and Zhu, H. (2018). ALS mutations of FUS suppress protein translation and disrupt the regulation of nonsense-mediated decay. Proc. Natl. Acad. Sci. U. S. A. 115, E11904-E11913.
DOI
|
31 |
Karousis, E.D., Nasif, S., and Muhlemann, O. (2016). Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact. Wiley Interdiscip. Rev. RNA 7, 661-682.
DOI
|
32 |
Kim, Y.K. and Maquat, L.E. (2019). UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond. RNA 25, 407-422.
DOI
|
33 |
Kishor, A., Fritz, S.E., and Hogg, J.R. (2019). Nonsense-mediated mRNA decay: the challenge of telling right from wrong in a complex transcriptome. Wiley Interdiscip. Rev. RNA e1548. doi: 10.1002/wrna.1548.
DOI
|
34 |
Kurosaki, T. and Maquat, L.E. (2016). Nonsense-mediated mRNA decay in humans at a glance. J. Cell Sci. 129, 461-467.
DOI
|
35 |
Wang, Z., Murigneux, V., and Le Hir, H. (2014). Transcriptome-wide modulation of splicing by the exon junction complex. Genome Biol. 15, 551.
DOI
|
36 |
Steurer, B., Janssens, R.C., Geverts, B., Geijer, M.E., Wienholz, F., Theil, A.F., Chang, J., Dealy, S., Pothof, J., van Cappellen, W.A., et al. (2018). Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II. Proc. Natl. Acad. Sci. U. S. A. 115, E4368-E4376.
DOI
|
37 |
Varsally, W. and Brogna, S. (2012). UPF1 involvement in nuclear functions. Biochem. Soc. Trans. 40, 778-783.
DOI
|