1 |
Lee, S.A., Jang, S., Yoon, E.K., Heo, J.-O., Chang, K.S., Choi, J.W., Dhar, S., Kim, G., Choe, J.E., Heo, J.B., et al. (2016). Interplay between ABA and GA modulates the timing of asymmetric cell divisions in the Arabidopsis root ground tissue. Mol. Plant 9, 870-884.
DOI
|
2 |
Levesque, M.P., Vernoux, T., Busch, W., Cui, H., Wang, J.Y., Blilou, I., Hassan, H., Nakajima, K., Matsumoto, N., Lohmann, J.U., et al. (2006). Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol. 4, e143.
DOI
|
3 |
Miyashima, S., and Nakajima, K. (2011). The root endodermis: a hub of developmental signals and nutrient flow. Plant Signal. Behav. 6, 1954-1958.
DOI
|
4 |
Paquette, A.J., and Benfey, P.N. (2005). Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT. Plant Physiol. 138, 636-640.
DOI
|
5 |
Pauluzzi, G., Divol, F., Puig, J., Guiderdoni, E., Dievart, A., and Perin, C. (2012). Surfing along the root ground tissue gene network. Dev. Biol. 365, 14-22.
DOI
|
6 |
Peng, J., Carol, P., Richards, D., King, K., Cowling, R., Murphy, G., and Harberd, N. (1997). The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. Genes Dev. 11, 3194-3205.
DOI
|
7 |
Pysh, L.D., Wysocka-Diller, J.W., Camilleri, C., Bouchez, D., and Benfey, P.N. (1999). The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J. 18, 111-119.
DOI
|
8 |
Rebouillat, J., Dievart, A., Verdeil, J., Escoute, J., Giese, G., Breitler, J., Gantet, P., Espeout, S., Guiderdoni, E., and Perin, C. (2009). Molecular genetics of rice root development. Rice 2, 15-34.
DOI
|
9 |
Rohde, A., Kurup, S., and Holdsworth, M. (2000). ABI3 emerges from the seed. Trends Plant Sci. 5, 418-419.
DOI
|
10 |
Scheres, B., Wolkenfelt, H., Willemsen, V., Terlouw, M., Lawson, E., Dean, C., and Weisbeek, P. (1994). Embryonic origin of the Arabidopsis primary root and root meristem initials. Development 120, 2475-2487.
|
11 |
Scheres, B., Di Laurenzio, L., Willemsen, V., Hauser, M.T., Janmaat, K., Weisbeek, P., and Benfey, P.N. (1995). Mutations affecting the radial organization of the Arabidopsis root display specific defects throughout the embryonic axis. Development 121, 53-62.
|
12 |
Shani, E., Weinstain, R., Zhang, Y., Castillejo, C., Kaiserli, E., Chory, J., Tsien, R.Y., and Estelle, M. (2013). Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. Proc. Natl. Acad. Sci. USA 110, 4834-4839.
DOI
|
13 |
Silverstone, A., Ciampaglio, C., and Sun, T. (1998). The Arabidopsis RGA gene encodes a transcriptional regulator repressing the gibberellin signal transduction pathway. Plant Cell 10, 155-169.
DOI
|
14 |
Smolarkiewicz, M., and Dhonukshe, P. (2013). Formative cell divisions: principal determinants of plant morphogenesis. Plant Cell Physiol. 54, 333-342.
DOI
|
15 |
Sridhar VV, Surendrarao A, and Liu Z (2006) APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower development. Development 133, 3159-3166.
DOI
|
16 |
Sun, T.P., and Gubler, F. (2004). Molecular mechanism of gibberellin signaling in plants. Ann. Rev. Plant Biol. 55, 197-223.
DOI
|
17 |
Ten Hove, C.A., and Heidstra, R. (2008). Who begets whom? Plant cell fate determination by asymmetric cell division. Curr. Opin. Plant Biol. 11, 34-41.
DOI
|
18 |
Ubeda-Tomas, S., Federici, F., Casimiro, I., Beemster, G.T., Bhalerao, R., Swarup, R., Doerner, P., Haseloff, J., and Bennett, M.J. (2009). Gibberellin signaling in the endodermis controls Arabidopsis root meristem size. Curr. Biol. 19, 1194-1199.
DOI
|
19 |
Tian, C., Wan, P., Sun, S., Li, J., and Chen, M. (2004). Genomewide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol. 54, 519-532.
DOI
|
20 |
Ubeda-Tomas, S., Swarup, R., Coates, J., Swarup, K., Laplaze, L., Beemster, G.T., Hedden, P., Bhalerao, R., and Bennett, M.J. (2008). Root growth in Arabidopsis requires gibberellin/DELLA signaling in the endodermis. Nat. Cell Biol. 10, 625-628.
DOI
|
21 |
Weiss, D., and Ori, N. (2007). Mechanisms of cross talk between gibberellin and other hormones. Plant Physiol. 144, 1240-1246.
DOI
|
22 |
Wu, S., Lee, C.M., Hayashi, T., Price, S., Divol, F., Henry, S., Pauluzzi, G., Perin, C., and Gallagher, K.L. (2014). A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots. Proc. Natl. Acad. Sci. USA 111, 16184-16189.
DOI
|
23 |
Zentella, R., Zhang, Z.L., Park, M., Thomas, S.G., Endo, A., Murase, K., Fleet, C.M., Jikumaru, Y., Nambara, E., Kamiya, Y., et al. (2007). Global analysis of DELLA direct targets in early gibberellin signaling in Arabidopsis. Plant Cell 19, 3037-3057.
DOI
|
24 |
Zhang, Z.L., Ogawa, M., Fleet, C.M., Zentella, R., Hu, J., Heo, J.-O., Lim, J., Kamiya, Y., Yamaguchi, S., and Sun, T.P. (2011). SCARECROW-LIKE 3 promotes gibberellin signaling by antagonizing master growth repressor DELLA in Arabidopsis. Proc. Natl. Acad. Sci. USA 108, 2160-2165.
DOI
|
25 |
Baum, S.F., Dubrovsky, Joseph G., and Rost, Thomas L. (2002). Apical organization and maturation of the cortex and vascular cylinder in Arabidopsis thaliana (Brassicaceae) roots. Am. J. Bot. 89, 908-920.
DOI
|
26 |
Abrash, E.B., and Bergmann, D.C. (2009). Asymmetric cell divisions: a view from plant development. Dev. Cell 16, 783-796.
DOI
|
27 |
Azhakanandam, S., Nole-Wilson, S., Bao, F., and Franks, R.G. (2008). SEUSS and AINTEGUMENTA mediate patterning and ovule initiation during gynoecium medial domain development. Plant Physiol. 146, 1165-1181.
DOI
|
28 |
Bao, F., Azhakanandam, S., and Franks, R.G. (2010). SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis. Plant Physiol. 152, 821-836.
DOI
|
29 |
Benfey, P.N., Linstead, P.J., Roberts, K., Schiefelbein, J.W., Hauser, M.T., and Aeschbacher, R.A. (1993). Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis. Development 119, 57-70.
|
30 |
Bolle, C. (2004). The role of GRAS proteins in plant signal transduction and development. Planta 218, 683-692.
DOI
|
31 |
Coudert, Y., Perin, C., Courtois, B., Khong, N.G., and Gantet, P. (2010). Genetic control of root development in rice, the model cereal. Trends Plant Sci. 15, 219-226.
DOI
|
32 |
Cui, H., and Benfey, P.N. (2009b). Cortex proliferation: simple phenotype, complex regulatory mechanisms. Plant Signal. Behav. 4, 551-553.
DOI
|
33 |
Cruz-Ramirez, A., Diaz-Trivino, S., Blilou, I., Grieneisen, V.A., Sozzani, R., Zamioudis, C., Miskolczi, P., Nieuwland, J., Benjamins, R., Dhonukshe, P., et al. (2012). A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150, 1002-1015.
DOI
|
34 |
Cui, H. (2015). Cortex proliferation in the root is a protective mechanism against abiotic stress. Plant Signal. Behav. 10, e1011949.
DOI
|
35 |
Cui, H., and Benfey, P.N. (2009a). Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J. 58, 1016-1027.
DOI
|
36 |
Cui, H., Levesque, M.P., Vernoux, T., Jung, J.W., Paquette, A.J., Gallagher, K.L., Wang, J.Y., Blilou, I., Scheres, B., and Benfey, P.N. (2007). An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316, 421-425.
DOI
|
37 |
Cui, H., Kong, D., Wei, P., Hao, Y., Torii, K.U., Lee, J.S., and Li, J. (2014). SPINDLY, ERECTA and its ligand STOMAGEN have a role in redox-mediated cortex proliferation in the Arabidopsis root. Mol. Plant 7, 1727-1739.
DOI
|
38 |
De Smet, I., and Beeckman, T. (2011). Asymmetric cell division in land plants and algae: the driving force for differentiation. Nat. Rev. Mol. Cell Biol. 12, 177-188.
DOI
|
39 |
Di Laurenzio, L., Wysocka-Diller, J., Malamy, J.E., Pysh, L., Helariutta, Y., Freshour, G., Hahn, M.G., Feldmann, K.A., and Benfey, P.N. (1996). The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86, 423-433.
DOI
|
40 |
Dinneny, J.R. (2014). A gateway with a guard: how the endodermis regulates growth through hormone signaling. Plant Sci. 214, 14-19.
DOI
|
41 |
Dolan, L., Janmaat, K., Willemsen, V., Linstead, P., Poethig, S., Roberts, K., and Scheres, B. (1993). Cellular organization of the Arabidopsis thaliana root. Development 119, 71-84.
|
42 |
Duan, L., Dietrich, D., Ng, C.H., Chan, P.M., Bhalerao, R., Bennett, M.J., and Dinneny, J.R. (2013). Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. Plant Cell 25, 324-341.
DOI
|
43 |
Esau, K. (1953). Plant anatomy. Wiley & Sons, New York.
|
44 |
Esau, K. (1977). Anatomy of seed plants, 2nd edition. Wiley & Sons, New York.
|
45 |
Finkelstein, R.R. (2013). Abscisic acid biosynthesis and response. In The Arabidopsis book 11, e0166.
|
46 |
Finkelstein, R.R., Gampala, S.S., and Rock, C.D. (2002). Abscisic acid signaling in seeds and seedlings. Plant Cell 14 Suppl, S15-45.
DOI
|
47 |
Finkelstein, R.R., Reeves, W., Ariizumi, T., and Steber, C. (2008). Molecular aspects of seed dormancy. Ann. Rev. Plant Biol. 59, 387-415.
DOI
|
48 |
Franks, R.G., Wang, C., Levin, J.Z., and Liu, Z. (2002). SEUSS, a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG. Development 129, 253-263.
|
49 |
Gong, X., Flores-Vergara, M.A., Hong, J.H., Chu, H., Lim, J., Franks, R.G., Liu, Z., and Xu, J. (2016). SEUSS integrates gibberellin signaling with transcriptional inputs from the SHR-SCR-SCL3 module to regulate middle cortex formation in the Arabidopsis root. Plant Physiol. 170, 1675-1683.
|
50 |
Grigorova B, Mara C, Hollender C, Sijacic P, Chen X, and Liu Z (2011) LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers. Development 138, 2451-2456.
DOI
|
51 |
Harberd, N.P., Belfield, E., and Yasumura, Y. (2009). The angiosperm gibberellin-GID1-DELLA growth regulatory mechanism: how an "inhibitor of an inhibitor" enables flexible response to fluctuating environments. Plant Cell 21, 1328-1339.
DOI
|
52 |
He, C.J., Drew, M.C., and Morgan, P.W. (1994). Induction of enzymes associated with Lysigenous aerenchyma formation in roots of Zea mays during hypoxia or nitrogen starvation. Plant Physiol. 105, 861-865.
DOI
|
53 |
Heidstra, R., Welch, D., and Scheres, B. (2004). Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division. Genes Dev. 18, 1964-1969.
DOI
|
54 |
Helariutta, Y., Fukaki, H., Wysocka-Diller, J., Nakajima, K., Jung, J., Sena, G., Hauser, M.T., and Benfey, P.N. (2000). The SHORTROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 101, 555-567.
DOI
|
55 |
Heo, J.-O., Chang, K.S., Kim, I.A., Lee, M.-H., Lee, S.A., Song, S.K., Lee, M.M., and Lim, J. (2011). Funneling of gibberellin signaling by the GRAS transcription regulator SCARECROW-LIKE 3 in the Arabidopsis root. Proc. Natl. Acad. Sci. USA 108, 2166-2171.
DOI
|
56 |
Hiratsu, K., Matsui, K., Koyama, T., and Ohme-Takagi, M. (2003). Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34, 733-739.
DOI
|
57 |
Jiang, C., and Fu, X. (2007). GA action: turning on de-DELLA repressing signaling. Curr. Opin. Plant Biol. 10, 461-465.
DOI
|
58 |
Hiratsu, K., Mitsuda, N., Matsui, K., and Ohme-Takagi, M. (2004). Identification of the minimal repression domain of SUPERMAN shows that the DLELRL hexapeptide is both necessary and sufficient for repression of transcription in Arabidopsis. Biochem. Biophys. Res. Commun. 321, 172-178.
DOI
|
59 |
Hoffmann-Benning, S., and Kende, H. (1992). On the role of abscisic acid and gibberellin in the regulation of growth in rice. Plant Physiol. 99, 1156-1161.
DOI
|
60 |
Horvitz, H.R., and Herskowitz, I. (1992). Mechanisms of asymmetric cell division: two Bs or not two Bs, that is the question. Cell 68, 237-255.
DOI
|
61 |
Knoblich, J.A. (2008). Mechanisms of asymmetric stem cell division. Cell 132, 583-597.
DOI
|
62 |
Ko, J.H., Yang, S.H., and Han, K.H. (2006). Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. Plant J. 47, 343-355.
DOI
|
63 |
Koizumi, K., Hayashi, T., and Gallagher, K.L. (2012a). SCARECROW reinforces SHORT-ROOT signaling and inhibits periclinal cell divisions in the ground tissue by maintaining SHR at high levels in the endodermis. Plant Signal. Behav. 7, 1573-1577.
DOI
|
64 |
Koizumi, K., Hayashi, T., Wu, S., and Gallagher, K.L. (2012b). The SHORT-ROOT protein acts as a mobile, dose-dependent signal in patterning the ground tissue. Proc. Natl. Acad. Sci. USA 109, 13010-13015.
DOI
|
65 |
Lee, M.-H., Kim, B., Song, S.K., Heo, J.O., Yu, N.I., Lee, S.A., Kim, M., Kim, D.G., Sohn, S.O., Lim, C.E., et al. (2008). Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol. 67, 659-670.
DOI
|