1 |
Pepe, D., and Grassi, M. (2014). Investigating perturbed pathway modules from gene expression data via structural equation models. BMC Bioinformatics 15, 132.
DOI
ScienceOn
|
2 |
Selvaraj, S., Sun, Y., Watt, J.A., Wang, S., Lei, S., Birnbaumer, L., and Singh, B.B. (2012). Neurotoxin-induced ER stress in mouse dopaminergic neurons involves downregulation of TRPC1 and inhibition of AKT/mTOR signaling. J. Clin. Invest. 122, 1354-1367.
DOI
ScienceOn
|
3 |
Tabuchi, Y., Yunoki, T., Hoshi, N., Suzuki, N., and Kondo, T. (2014). Genes and gene networks involved in sodium fluoride-elicited cell death accompanying endoplasmic reticulum stress in oral epithelial cells. Int. J. Mol. Sci. 15, 8959-8978.
DOI
ScienceOn
|
4 |
Tarca, A.L., Draghici, S., Khatri, P., Hassan, S.S., Mittal, P., Kim, J.S., Kim, C.J., Kusanovic, J.P., and Romero, R. (2009). A novel signaling pathway impact analysis. Bioinformatics 25, 75-82.
DOI
ScienceOn
|
5 |
Tusher, V.G., Tibshirani, R., and Chu, G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98, 5116-5121.
DOI
ScienceOn
|
6 |
Marciniak, S.J., Yun, C.Y., Oyadomari, S., Novoa, I., Zhang, Y., Jungreis, R., Nagata, K., Harding, H.P., and Ron, D. (2004). CHOP induces death by promoting protein synthesis and oxidation in the stressed endoplasmic reticulum. Genes Dev. 18, 3066-3077.
DOI
ScienceOn
|
7 |
Matsumoto, M., Minami, M., Takeda, K., Sakao, Y., and Akira, S. (1996). Ectopic expression of CHOP (GADD153) induces apoptosis in M1 myeloblastic leukemia cells. FEBS Lett. 395, 143-147.
DOI
ScienceOn
|
8 |
McCullough, K.D., Martindale, J.L., Klotz, L.O., Aw, T.Y., and Holbrook, N.J. (2001). Gadd153 sensitizes cells to endoplasmic reticulum stress by down-regulating Bcl2 and perturbing the cellular redox state. Mol. Cell. Biol. 21, 1249-1259.
DOI
ScienceOn
|
9 |
Nakamura, K., Bindokas, V.P., Marks, J.D., Wright, D.A., Frim, D.M., Miller, R.J., and Kang, U.J. (2000). The selective toxicity of 1- methyl-4-phenylpyridinium to dopaminergic neurons: the role of mitochondria complex I and reactive oxygen species revisited. Mol. Pharmacol. 58, 271-278.
|
10 |
Nanjo, F., Goto, K., Seto, R., Suzuki, M., Sakai, M., and Hara, Y. (1996). Scavenging effects of tea catechins and their derivatives on 1,1-diphenyl-2-picrylhydrazyl radical. Free Radic. Biol. Med. 21, 895-902.
DOI
ScienceOn
|
11 |
Nicotra, A., and Parvez, S. (2002). Apoptotic molecules and MPTPinduced cell dealth. Neurotoxicol. Teratol. 24, 599-605.
DOI
ScienceOn
|
12 |
Hochberg, Y. (1988). A sharper Bonferroni procedure for multiple tests of significance. Biometrika 75, 800-802.
DOI
ScienceOn
|
13 |
Oyadomari, S., and Mori, M. (2004). Roles of CHOP/GADD153 in endoplasmic reticulum stress. Cell Death Differ. 11, 381-389.
DOI
ScienceOn
|
14 |
Pandey, R., Guru, R.K., and Mount, D.W. (2004). Pathway miner:Extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data. Bioinformatics 20, 2156-2158.
DOI
ScienceOn
|
15 |
Gotoh, T., Takeda, K., Oyadomari, S., and Mori, M. (2004). hsp70-DnaJ chaperone pair prevents nitric oxide-, CHOP-induced apoptosis by inhibiting translocation of Bax to mitochondria. Cell Death Differ. 11, 390-402.
DOI
ScienceOn
|
16 |
Hoevel, T., Macek, R., Swisshelm, K., and Kubbies, M. (2004). Reexpression of the TJ protein CLDN1 induces apoptosis in breast tumor spheroids. Int. J. Cancer 108, 374-383.
DOI
ScienceOn
|
17 |
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., and Tanabe, M. (2012). KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40, D109-114.
DOI
|
18 |
Kim, I.S., Choi, D.-K., and Do, J.H. (2013). Genome-wide temporal responses of human neuroblastoma SH-SY5Y cells to neurotoxicity. BioChip J. 7, 247-257.
DOI
|
19 |
Kumar, A., Tikoo, S., Maity, S., Sengupta, S., Sengupta, S., Kaur, A., and Bachhawat, A.K. (2012). Mammalian proapoptotic factor ChaC1 and its homologues function as -glutamylcyclotransferases acting specifically on glutathione. EMBO Rep. 13, 1095-1101.
DOI
ScienceOn
|
20 |
Langston, J.W., Ballard, P., and Irwin, I. (1983). Chronic parkinsonism in human due to a product of meperidine-analog synthesis. Science 219, 979-980.
DOI
|
21 |
Livak, K.J., and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta DeltaC(T)) method. Methods 25, 402-408.
DOI
ScienceOn
|
22 |
Lotharius, J., and O'Malley, K.L. (2000). The parkinsonism-inducing drug 1-methyl-4-phenylpyridinium triggers intracellular dopamine oxidation. A novel mechanism of toxicity. J. Biol. Chem. 275, 38581-38588.
DOI
ScienceOn
|
23 |
Conn, K.J., Ullman, M.D., Larned, M.J., Eisenhauer, P.B., Fine, R.E., and Wells, J.M. (2003). cDNA microarray analysis of changes in gene expression associated with toxicity in SH-SY5Y cells. Neurochem. Res. 28, 1873-1881.
DOI
ScienceOn
|
24 |
Date, I., Yoshimoto, Y., Imaoka, T., Miyoshi, Y., Gohda, Y., Furuta, T., Asari, S., and Ohmoto, T. (1993). Enhanced recovery of the nigrostriatal dopaminergic system in MPTP-treated mice following intrastriatal injection of basic fibroblast growth factor in relation to aging. Brain Res. 621, 150-154.
DOI
ScienceOn
|
25 |
Do, J.H., Kim, I.S., Lee, J.D., and Choi, D.-K. (2011). Comparison of genomic profiles in human neuroblastic SH-SY5Y and substrateadherent SH-EP cells using array comparative genomic hybridization. BioChip J. 5, 165-174.
DOI
|
26 |
Doniger, S.W., Salomonis, N., Dahlquist, K.D., Vranizan, K., Lawlor, S.C., and Conklin, R.R. (2003). MAPPfinder: using Gene Ontology and GenMAPP to create a global gene expression profile from microarray data. Genome Biol. 4, R7.
DOI
|
27 |
Goeman, J.J., van de Geer, S.A., de Kort, F., and van Houwelingen, H.C. (2004). A global test for groups of genes: testing association with a clinical outcome. Bioinformatics 20, 93-99.
DOI
ScienceOn
|
28 |
Drăghici, S., Khatri, P., Martins, R.P., Ostermeier, G.C., and Krawetz, S.A. (2003). Global functional profiling of gene expression. Genomics 81, 98-104.
DOI
ScienceOn
|
29 |
Galvez-Jimenez, N. (2007). Parkinson's disease. In Neurobiology of Disease, S. Gilman, ed. (USA: Elsevier Academic Press), p. 55.
|
30 |
Ghribi, O., Herman, M.M., Pramoonjago, P., and Savory, J. (2003). induces the endoplasmic reticulum stress response in rabbit brain involving activation of the ATF-6 and NF-kappaB signaling pathways. J. Neuropathol. Exp. Neurol. 62, 1144-1153.
DOI
|
31 |
Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M.R., et al. (2014). The Reactome pathway knowledgebase. Nucleic Acids Res. 42, D472-D477.
DOI
ScienceOn
|
32 |
Bandiera, S., Rüberg, S., Girard, M., Cagnard, N., Hanein, S., Chretien, D., Munnich, A., Lyonnet, S., and Henrion-Caude, A. (2011). PLos One 6, e20746.
DOI
|
33 |
Benjamini, Y., and Yekutieli, D. (2001).The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188.
DOI
ScienceOn
|
34 |
Conn, K.J., Gao, W.W., Ullman, M.D., McKeon-O'Malley, C., Eisenhaur, P.B., Fine, R.E., and Wells, J.M. (2002). Specific upregulation of GADD153/CHOP in 1-methyl-4-phenyl-pyridiniumtreated SH-SY5Y cells. J. Neurosci. Res. 68, 755-760.
DOI
ScienceOn
|
35 |
Kogel, D., Svensson, B., Copanaki, E., Anguissola, S., Bonner, C., Thurow, N., Gudorf, D., Hetschko, H., Muller, T., Peters, M., et al. (2006). Induction of transcription factor CEBP homology protein mediates hypoglycaemia-induced necrotic cell death in human neuroblastoma cells. J. Neurichem. 99, 952-964.
DOI
ScienceOn
|
36 |
Almeida, R.D., Manadas, B.J., Melo, C.V., Gomes, J.R., Mendes, C.S., Graos, M.M., Carvalho, R.F., Carvalho, A.P., and Duarte, C.B. (2005). Neuroprotection by BDNF against glutamateinduced apoptotic cell death is mediated by ERK and PI3-kinase pathways. Cell Death Differ. 12, 1329-1343.
DOI
ScienceOn
|
37 |
Wang, Y., Barbacioru, C., Hyland, F., Xiao, W., Hunkapiller, K.L., Blake, J., Chan, F., Gonzalez, C., Zhang, L., and Samaha, R.R. (2006). Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics 7, 59.
DOI
ScienceOn
|
38 |
Mungrue, I.N., Pagnon, J., Kohannim, O., Gargalovic, P.S., and Lusis, A.J. (2009). CHAC1/MGC4504 is a novel proapoptotic component of the unfolded protein response, downstream of the ATF4-ATF3-CHOP cascade. J. Immunol. 182, 466-476.
DOI
|