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http://dx.doi.org/10.1007/s10059-009-0125-9

Complete Mitochondrial Genome of Brown Marmorated Stink Bug Halyomorpha halys (Hemiptera: Pentatomidae), and Phylogenetic Relationships of Hemipteran Suborders  

Lee, Wonhoon (Insect Biosystematics Laboratory, Research Institute for Agricultural and Life Sciences, Department of Agricultural Biotechnology, Seoul National University)
Kang, Joongnam (Department of Forest Insect Pests and Diseases, Korea Forest Research Institute)
Jung, Chansik (Department of Forest Insect Pests and Diseases, Korea Forest Research Institute)
Hoelmer, Kim (USDA Agricultural Research Service, Beneficial Insect Introduction Research Laboratory)
Lee, Si Hyeock (Insect Molecular Biology and Toxicology Laboratory, Research Institute for Agricultural and Life Sciences, Department of Agricultural Biotechnology, Seoul National University)
Lee, Seunghwan (Insect Biosystematics Laboratory, Research Institute for Agricultural and Life Sciences, Department of Agricultural Biotechnology, Seoul National University)
Publication Information
Molecules and Cells / v.28, no.3, 2009 , pp. 155-165 More about this Journal
Abstract
The newly sequenced complete mitochondrial genome of the brown marmorated stink bug, Halyomorpha halys($St{\aa}l$) (Hemiptera: Pentatomidae), is a circular molecule of 16,518 bp with a total A+T content of 76.4% and two extensive repeat regions in A+T rich region. Nucleotide composition and codon usage of H. halys are about average when compared with values observed in 19 other published hemipteran mitochondrial genomes. Phylogenetic analyses using these 20 hemipteran mitochondrial genomes support the currently accepted hypothesis that suborders Heteroptera and Auchenorrhyncha form a monophyletic group. The mitochondrial gene arrangements of the 20 genomes are also consistent with our results.
Keywords
gene rearrangement; Halyomorpha halys; Hemiptera; mitochondrial genome; phylogeny;
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1 Kim, K.-G., Hong, M.Y., Kim, M.J., Im, H.H., Kim, M.I., Bae, C.H., Seo, S.J., Lee, S.H., and Kim, I. (2009). Complete mitochondrial genome sequence of the yellow-spotted long-horned beetle Psacothea hilaris (Coleoptera: Cerambycidae) and phylogenetic analysis among coleopteran insects. Mol. Cells 27, 429-441   DOI   ScienceOn
2 Kristensen, N. (1973). The phylogeny of hexapod 'orders.' A critical review of recent accounts. J. Zool. Syst. Evol. Res. 13, 1-44   DOI
3 Kristensen, N. (1981). Phylogeny of insect orders. Annu. Rev. Entomol. 26, 135-157   DOI   ScienceOn
4 Kristensen, N.P. (1991). Phylogeny of extant hexapods, In: CSIRO (ed) The insects of Australia. A textbook for students and research workers, Vol. I, 2nd ed. (Carlton: Melbourne University Press), p. 125
5 Lessinger, A.C., Martins Junqueira, A.C., Lemos, T.A., Kemper, E.L., da Silva, F.R., Vettore, A.L., Arruda, P., and Azeredo-Espin, A.M. (2000). The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae). Insect Mol. Biol. 9, 521-529   DOI   ScienceOn
6 Nylander, J.A., Ronquist, F., Huelsenbeck, J.P., and Nieves-Aldrey, J.L. (2004). Bayesian phylogenetic analysis of combined data. Syst. Biol. 53, 47-67   DOI   ScienceOn
7 Posada, D., and Crandall, K.A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818   DOI   ScienceOn
8 Swofford, D.L. (2002). PAUP*: Phylogenetic analysis using parsimony (*and other methods) Sunderland: Sinauer Associates
9 Szelegiewicz, H. (1971). Autapomorphous wing characters in the recent subgroups of Sternorrhyncha (Hemiptera) and their significance in the interpretation of the Paleozoic members of the group. Ann. Zool. Fenn. 29, 1-67.
10 Wootton, R.J., and Betts, C.R. (1986). Homology and function in the wings of Heteroptera. Syst. Entomol. 11, 389-400   DOI
11 Schuh, R.T., and Slater, J.A. (1995). True bugs of the world (Hemiptera, Heteroptera): Classification and Natural History. (New York: Cornell University Press)
12 Folmer, O., Black, M., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxydase subunit I from diverse metazoan invertebrates. Mol. Marine Biol. Biotechnol. 3, 294-299   PUBMED
13 Hennig, W. (1981). Insect phylogeny (New York: J Wiley and Sons)
14 Kambhampati, S., and Smith, P.T. (1995). PCR primers for the amplification of four insect mitochondrial gene fragments. Insect Mol. Biol. 4, 233-236   DOI   ScienceOn
15 Goodchild, A. (1966). Evolution of the alimentary canal in the Hemiptera. Biol. Rev. 41, 97-140   DOI
16 Jermiin, L.S., and Crozier, R.H. (1994). The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. J. Mol. Evol. 38, 282-294   DOI   PUBMED
17 Scudder, G. (1973). Recent advances in the higher systematics and phylogenetic concepts in entomology. Can. Entomol. 105, 1251-1263   DOI
18 Hoebeke, E.R., and Carter, M.E. (2003).Halyomorpha halys(Heteroptera: Pentatomidae): a polyphagous plant pest from Asia newly detected in North America. Proc. Entomol. Soc. Wash. 105, 225-237   PUBMED
19 Boore, J.L., Collins, T.M., Stanton, D., Daehler, L.L., and Brown, W.M. (1995). Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376, 163-165   DOI   ScienceOn
20 Cobben, R.H. (1978). Evolutionary trends in Heteroptera. Part II. Mouthpart-structures and feeding strategies (The Netherlands, Wageningen: Mededelingen Landbouwhogeschool)
21 Muraji, M., and Tachikawa, S. (2000). Phylogenetic analysis of water striders (Hemiptera:Gerroidea) based on partial sequences of mitochondrial and nuclear ribosomal RNA genes. Entomol. Sci. 3, 615-626
22 Dotson, E.M., and Beard, C.B. (2001). Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata. Insect Mol. Biol. 10, 205-215   DOI   ScienceOn
23 Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791   DOI   ScienceOn
24 Lowe, T.M., and Eddy, S.R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964   DOI   ScienceOn
25 Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882   DOI   ScienceOn
26 Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17, 540-552   DOI   PUBMED   ScienceOn
27 Dowton, M. (1999). Relationships among the cyclostome braconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement. Mol. Phylogenet. Evol. 11, 283-287   DOI   PUBMED   ScienceOn
28 Muraji, M., Kawasaki, K., and Shimizu, T. (2000). Phylogenetic utility of nucleotide sequences of mitochondrial 16S ribosomal RNA and cytochrome b genes in anthocorid bugs (Heteroptera: Anthocoridae). Appl. Entomol. Zool. (Jpn.) 35, 293-300   DOI   ScienceOn
29 Thao, M.L., Baumann, L., and Baumann, P. (2004). Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha). BMC Evol. Biol. 4, 25   DOI   PUBMED   ScienceOn
30 von Dohlen, C.D., and Moran, N.A. (1995). Molecular phylogeny of the Homoptera: a paraphyletic taxon. J. Mol. Evol. 41, 211-223   DOI   PUBMED
31 Boore, J.L. (1999) Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767-1780   DOI   PUBMED   ScienceOn
32 Boore, J.L., and Brown, W.M. (1998). Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8, 668-674   DOI   ScienceOn
33 Kukalova-Peck, J. (1991). Fossil history and the evolution of hexapod structures. In: CSIRO (ed) The insects of Australia. A textbook for students and research workers, Vol. I, 2nd ed. (Carlton: Melbourne University Press), p. 141
34 Hua, J., Li, M., Dong, P., Cui, Y., Xie, Q., and Bu, W. (2008). Comparative and phylogenomic studies on the mitochondrial genomes of Pentatomomorpha (Insecta: Hemiptera: Heteroptera). BMC Genomics 9, 610   DOI   PUBMED   ScienceOn
35 Ross, H. (1965). A textbook of entomology, 3rd ed. (New York: Wiley)
36 Boore, J.L., Macey, J.R., and Medina, M. (2005). Sequencing and comparing whole mitochondrial genomes of animals. Meth. Enzymol. 395, 311-348   DOI   PUBMED   ScienceOn
37 Carver, M., Gross, G., and Woodward, T. (1991). Hemiptera (bugs, leafhoppers, cicadas, aphids, scale insects etc.). In: CSIRO (ed) The insects of Australia. A textbook for students and research workers, Vol. I, 2nd ed. (Carlton: Melbourne University Press), p. 429
38 Stewart, J.B., and Beckenbach, A.T. (2005). Insect mitochondrial genomics: the complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchenorrhyncha: Cercopoidae). Genome 48, 46-54   DOI   ScienceOn
39 Lee, W., Park, J., Choi, J., Jung, K., Park, B., Kim, D., Lee, J., Ahn, K., Song, W., Kang, S., et al. (2009). IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes. BMC Genomics 10, 148   DOI   PUBMED   ScienceOn
40 Rawlings, T.A., Collins, T.M., and Bieler, R. (2001). A major mitochondrial gene rearrangement among closely related species. Mol. Biol. Evol. 18, 1604-1609   DOI   PUBMED   ScienceOn
41 Hamilton, K. (1981). Morphology and evolution of the rhynchotan head (Insecta: Hemiptera, Homoptera). Can. Entomol. 113, 953-974   DOI
42 Rokas, A., and Holland, P.W. (2000). Rare genomic changes as a tool for phylogenetics. Trends Ecol. Evol. 15, 454-459   DOI   ScienceOn
43 Poisson, R., and Pesson, P. (1951). Super-ordre des Hemipteroides (Hemiptera Linne, 1758, Rhynchota Burrueister, 1835), In: Grasse P-P (ed) Traite de Zoologic: Anatomic, Systematique, Biologic. Tome X. Insectes superieurs, et Hemipteroides.2 vols (Masson, Paris), pp. 1-975, 976-1948
44 Shao, R., and Barker, S.C. (2003). The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol. Biol. Evol. 20, 362-370   DOI   ScienceOn
45 Huelsenbeck, J.P., and Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755   DOI   ScienceOn
46 Benson, G. (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580   DOI   PUBMED   ScienceOn