[KSCI] Korea Science Citation Index Service

http://dx.doi.org/10.1007/s10059-009-0005-3

Molecular Phylogeny of the Family Tephritidae (Insecta: Diptera): New Insight from Combined Analysis of the Mitochondrial 12S, 16S, and COII Genes

Han, Ho-Yeon (Division of Biological Science and Technology, College of Science and Technology, Yonsei University)
Ro, Kyung-Eui (Division of Biological Science and Technology, College of Science and Technology, Yonsei University)

Abstract

The phylogeny of the family Tephritidae (Diptera: Tephritidae) was reconstructed from mitochondrial 12S, 16S, and COII gene fragments using 87 species, including 79 tephritid and 8 outgroup species. Minimum evolution and Bayesian trees suggested the following phylogenetic relationships: (1) A sister group relationship between Ortalotrypeta and Tachinisca, and their basal phylogenetic position within Tephritidae; (2) a sister group relationship between the tribe Acanthonevrini and Phytalmiini; (3) monophyly of Plioreocepta, Taomyia and an undescribed new genus, and their sister group relationship with the subfamily Tephritinae; (4) a possible sister group relationship of Cephalophysa and Adramini; and (5) reconfirmation of monophyly for Trypetini, Carpomyini, Tephritinae, and Dacinae. The combination of 12S, 16S, and COII data enabled resolution of phylogenetic relationships among the higher taxa of Tephritidae.

Keywords

12S rRNA; 16S rRNA; COII; phylogeny; Tephritidae;

Citations & Related Records

Times Cited By KSCI : 2 (Citation Analysis)
Times Cited By Web Of Science : 6 (Related Records In Web of Science)

Reference
Cited By KSCI

1	Freidberg, A. (1984). Gall Tephritidae (Diptera). In Biology of Gall Insects, T.N. Ananthakrishnan, ed. (New Delhi: Oxford and IBH Publishing Co.), pp. 129-167
2	Han, H.-Y., and Ro, K.-E. (2002). Molecular systematics of Tephritidae (Insecta: Diptera): testing phylogenetic position of Korean Acidiella spp. (Trypetini) using mitochondrial 16S rDNA sequences. Korean J. Biol. Sci. S, 13-18 과학기술학회마을 DOI
3	Han, H.-Y., and Ro, K.-E. (2005). Molecular phylogeny of the superfamily Tephritoidea (Insecta: Diptera): new evidence from the mitochondrial 12S, 16S, and COII genes. Mol. Phylogen. Evol. 39, 416-430 DOI PUBMED ScienceOn
4	Huelsenbeck, J.P., and Rannala, B. (2004). Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 53, 904-913 DOI PUBMED ScienceOn
5	Lanave, C.G., Preparata, C., Saccone, C., and Serio, G. (1984). A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20, 86-93 DOI PUBMED
6	Norrbom, A.L. (2006). A revision of the Neotropical genera Molynocoelia Giglio-Tos, Pseudophorellia Lima, and Alugamyia, n. gen. (Diptera: Tephritidae). In Biotaxonomy of Tephritoidea, A. Freidberg, ed., Isr. J. Entomol. 35-36, 35-145
7	White, I.M., and Elson-Harris, M.M. (1992). Fruit Flies of Economic Significance: Their Identification and Bionomics (Wallingford, UK: CAB International)
8	Huelsenbeck, J.P., and Ronquist, F.R. (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754 DOI PUBMED ScienceOn
9	Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1997). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acid Res. 22, 4673-4680 DOI PUBMED
10	Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98
11	Yang, Z. (1994b). Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39, 306-314 DOI PUBMED
12	Sheppard, W.S., Steck, G.J., and McPheron, B.A. (1992). Geographic populations of the medfly may be differentiated by mitochondrial DNA variation. Experientia 49, 1010-1013 DOI ScienceOn
13	Han, H.-Y., and Norrbom, A.L. (2008). A new species of Philophylla Rondani (Diptera: Tephritidae: Trypetini). from New Caledonia, recognized based on female postabdominal structure and molecular sequence data. Zootaxa 1759, 43-50
14	Korneyev, V.A. (1999a). Phylogenetic relationships among the families of the superfamily Tephritoidea. In Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, M. Aluja, A.L. Norrbom, eds. (CRC Press), pp. 3-22
15	Han, H.-Y., Ro, K.-E., and McPheron, B.A. (2006). Molecular phylogeny of the subfamily Tephritinae (Diptera: Tephritidae) based on mitochondrial 16S rDNA sequences. Mol. Cells 22, 78-88 PUBMED
16	Korneyev, V.A. (1999c). Phylogeny of the subfamily Tephritnae: relationships of the tribes and subtribes. In Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, M. Aluja, and A.L. Norrbom, eds. (CRC Press), pp. 549-580
17	Han, H.-Y. (1992). Classification of the tribe Trypetini (Diptera:Tephritidae: Trypetinae). Ph.D. thesis, Pennsylvania State University, pp. 274
18	Korneyev, V.A., and Norrbom, A.L. (2006). Genera of the subfamily Tachiniscinae (Diptera, Tephritidae), with discussion of the position of Descoleia Acz $$\$ l and Nosferatumyia gen. n. (Tephritoidea incertae sedis). Instrumenta Biodiversitatis 7, 105-155
19	Rzhetsky, A., and Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9, 945-967
20	Gu, X., Fu, Y.-X., and Li, W.-H. (1995). Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12, 546-557 PUBMED
21	Swofford, D.L. (2002). $PAUP^{}$ , Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4.0b10 (Sunderland, Massachusetts: Sinauer Associates)
22	Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA). software version 4.0. Mol. Biol. Evol. 24, 1596-1599 DOI PUBMED ScienceOn
23	Han, H.-Y. (2000). Molecular phylogenetic study of the tribe Trypetini (Diptera: Tephritidae), using mitochondrial 16S ribosomal DNA sequences. Biochem. Syst. Ecol. 28, 501-513 DOI ScienceOn
24	Castresana, J. (2002). GBLOCKS: selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Version 0.91b. Copyrighted by J. Castresana, EMBL
25	Han, H.-Y., and McPheron, B.A. (1997). Molecular phylogenetic study of Tephritidae (Insecta: Diptera). using partial sequences of the mitochondrial 16S ribosomal DNA. Mol. Phylogent. Evol. 7, 17-32 DOI PUBMED ScienceOn
26	Foote, R.H., Blanc, F.L., and Norrbom, A.L. (1993). Handbook of the Fruit Flies (Diptera: Tephritidae) of America North of Mexico (Ithaca: Comstock Publishing Associates)
27	Han, H.-Y., and McPheron, B.A. (1999). Nucleotide sequence data as a tool to test phylogenetic relationships among higher groups of Tephritidae: a case study using mitochondrial ribosomal DNA. In Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, M. Aluja, and A.L. Norrbom, eds. (CRC Press), pp. 115-132
28	Korneyev, V.A. (1999b). Phylogenetic relationships among higher groups of Tephritidae. In Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, M. Aluja, and A.L. Norrbom, eds. (CRC Press), pp. 73-113
29	Posada, D., and Crandall, K.A. (1998). Modeltest: Testing the model of DNA substitution. Bioinformatics 14, 817-818 DOI PUBMED
30	Smith, J.J., and Bush, G.L. (1997). Phylogeny of the genus Rhagoletis (Diptera: Tephritidae). inferred from DNA sequences of mitochondrial cytochrome oxidase II. Mol. Phylogenet. Evol. 7, 33-43 DOI PUBMED ScienceOn
31	McPheron, B.A., and Han, H.-Y. (1997). Phylogenetic analysis of North American Rhagoletis (Diptera: Tephritidae). and related genera using mitochondrial DNA sequence data. Mol. Phylogent. Evol. 7, 1-16 DOI PUBMED ScienceOn
32	Norrbom, A.L., Carroll, L.E., Thompson, F.C., White, I.M., and Freidberg, A. (1999). Systematic database of name. In Fruit Fly Expert System and Systematic Information Database, F.C. Thompson, ed. (Diptera Data Dissemination Disk 1 & Myia), pp. 65-251
33	Hancock, D.L. (1986). Classification of the Trypetinae (Diptera: Tephritidae), with a discussion of the Afrotropical fauna. J. Entomol. Soc. S. Afr. 49, 275-305

None	(2010) Annual review of entomology Olive Fruit Fly: Managing an Ancient Pest in Modern Times / 55 (None) , 151
8	(2009) Oikos : acta oecologica Scandinavica Exploring patterns and mechanisms of interspecific and intraspecific variation in body elemental composition of desert consumers / 120 (8) , 1247
6	(2011) Genetica. : an international journal of genetics and evolution Cytogenetic analysis of the Ethiopian fruit fly Dacus ciliatus (Diptera: Tephritidae) / 139 (6) , 723
5	(2009) 遺傳 Phylogenetic relationships among Orthoptera insect groups based on complete sequences of 16S ribosomal RNA : Phylogenetic relationships among Orthoptera insect groups based on complete sequences of 16 / 34 (5) , 597
3	(2012) Molecular phylogenetics and evolution A molecular phylogeny for the Tribe Dacini (Diptera: Tephritidae): Systematic and biogeographic implications / 64 (3) , 513
None	(2013) ZooKeys Half of the European fruit fly species barcoded (Diptera, Tephritidae); a feasibility test for molecular identification / 365 (None) , 279
53	(2014) Zoological studies DNA barcoding of Palaearctic Ulidiidae (Diptera: Tephritoidea): morphology, DNA evolution, and Markov codon models / 53 (53) , 51
6	(2009) Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine Conserved metallomics in two insect families evolving separately for a hundred million years / 27 (6) , 1323
None	(2009) Scientific reports Complete mitochondrial genome of <I>Bactrocera arecae</I> (Insecta: Tephritidae) by next-generation sequencing and molecular phylogeny of Dacini tribe / 5 (None) , 15155
1	(2009) The Florida entomologist : official organ of the Florida Entomological Society Phylogeny of the Genus<I>Paramyiolia</I>Shiraki (Diptera: Tephritidae: Trypetini) with Descriptions of Five Chinese Species / 98 (1) , 86
None	(2015) Molecular phylogenetics and evolution Higher phylogeny of frugivorous flies (Diptera, Tephritidae, Dacini): Localised partition conflicts and a novel generic classification / 85 (None) , 171
4	(2016) Mitochondrial DNA. Part A The complete mitochondrial genome of the pumpkin fruit fly, <I>Bactrocera tau</I> (Diptera: Tephritidae) / 27 (4) , 2502
1	(2009) The Bulletin of zoological nomenclature Case 3772 - Anastrepha Schiner, 1868 (Insecta, Diptera, Tephritidae): Proposed precedence over Toxotrypana Gerstaecker, 1860 / 75 (1) , 165
None	(2017) Molecular phylogenetics and evolution Phylogenetic relationships of the tribe Toxotrypanini (Diptera: Tephritidae) based on molecular characters / 113 (None) , 84
None	(2009) Scientific reports The chromosomes and the mitogenome of <I>Ceratitis fasciventris</I> (Diptera: Tephritidae): two genetic approaches towards the <I>Ceratitis</I> FAR species complex resolution / 7 (None) , 4877
None	(2017) Scientific reports The mitochondrial genome of the wolfberry fruit fly, <I>Neoceratitis asiatica</I> (Becker) (Diptera: Tephritidae) and the phylogeny of <I>Neoceratitis</I> Hendel genus / 7 (None) , 16612
4	(2018) Proceedings of the Entomological Society of Washington Synonymy of<I>Toxotrypana</I>Gerstaecker with<I>Anastrepha</I>Schiner (Diptera: Tephritidae) / 120 (4) , 834
2	(2009) The Canadian entomologist Latitudinal patterns in phylogenetic and functional diversity of Diptera in temperate bogs / 151 (2) , 187
1	(2009) Zoologica scripta Phylogeny of Adramini (Diptera, Tephritidae) based on integrative evidence / 50 (1) , 71
8	(2009) Molecular biology reports Complete mitochondrial genome of Dacus vijaysegarani and phylogenetic relationships with congeners and other tephritid fruit flies (Insecta: Diptera) / 48 (8) , 6047
4	(2009) Journal of asia-pacific entomology A new genus in the tribe Acidoxanthini (Diptera: Tephritidae: Trypetinae) from India, with a discussion of its phylogenetic relationships / 24 (4) , 1194