Identification of QTLs Associated with Physiological Nitrogen Use Efficiency in Rice |
Cho, Young-Il
(Department of Plant Science, Seoul National University)
Jiang, Wenzhu (Department of Plant Science, Seoul National University) Chin, Joong-Hyoun (Department of Plant Science, Seoul National University) Piao, Zhongze (Crop Research Institute, Shanghai Academy of Agricultural Sciences) Cho, Yong-Gu (Department of Plant Breeding, Cornell University) McCouch, Susan R. (Department of Agronomy, Chungbuk National University) Koh, Hee-Jong (Department of Plant Science, Seoul National University) |
1 | Cao, G., Zhu, J., He, C., Gao, Y., Yan, J., et al. (2001) Impact of epistasis and QTLenvironment interaction on the developmental behavior of plant height in rice (Oryza sativa L.). Theor. Appl. Genet. 103, 153−160 |
2 | Humphries, E. C. (1956) Mineral components and ash analysis. Soil Sci. 100, 112−117 |
3 | Kang, H. J., Cho, Y. G., Lee, Y. T., Eun, M. Y., and Shim, J. U. (1998) QTL mapping of genes conferring days to heading, culm length and panicle length based on molecular map of rice (Oryza sativa L.). RDA. J. Crop Sci. 40, 55−61 |
4 | Lincoln, S., Daly, M., and Lander, E. (1992) Constructing genetics maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report, Whitehead Institute, Cambridge, Massachusetts, USA |
5 | Moll, R. H., Kamprath, E. J., and Jackson, W. A. (1982) Analysis and interpretation of factors which contribute to efficiency of nitrogen utilization. Agron. J. 74, 526−564 |
6 | Mollaretti, G., Bosio, M., Gentinetta, E., and Motto, M. (1987) Genotypic variabililty for N-related traits in maize. Identification of inbred lines with high or low levels on -N in the stalks. Maydica 32, 309−323 |
7 | Seo, J. H, Lee, H. J., and Lee, S. H. (2005) Improvement of nitrogen efficiency by N application at early tillering stage in direct-seeded rice. Korean J. Crop Sci. 50, 16−21 |
8 | Wang, D. L., Zhu, J., Li, Z. K., and Paterson, A. H. (1999) Mapping QTLs with epistatic effects and QTLenvironment interactions by mixed linear model approaches. Theor. Appl. Genet. 99, 1255−1264 |
9 | Xing, Y. Z., Tan, Y. F., Hua, J. P., Sun, X. I., Xu, C., et al. (2002) Characterization of the main effects, epistatic effects and their environment interacations of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 105, 248−257 |
10 | Cho, Y. I. and Koh, H. J. (2005) Genotypic variation of physiological nitrogen use efficiency and its relationship with agronomic characters in rice. Korean J. Breed. 37, 311−318 |
11 | Fang, P. and Wu, P. (2001) QTL x N-level interaction for plant height in rice (Oryza sativa L.). Plant Soil 236, 237−242 |
12 | Causse, M. A., Fulton, T. M., Cho, Y. G., Ahn, S. N., Chunwongse, J., et al. (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138, 1251−1274 |
13 | Cai, W. and Morishima, H. (2002) QTL clusters reflect character associations in wild and cultivated rice. Theor. Appl. Genet. 104, 1217−1228 |
14 | Teyker, R. H., Moll, R. H., and Jackson, W. A. (1989) Divergent selection among maize seedlings for nitrate uptake. Crop Sci. 29, 879−884 |
15 | Eghball, B. and Maranville, J. W. (1991) Interactive effects of water and nitrogen stresses on nitrogen utilization efficiency, leaf water status and yield of corn geontypes. Commun. Soil Sci .Plant Anal. 22, 1367−1382 |
16 | Nelson, J. C. (1997) QGENE: software for marker-based genomic analysis and breeding. Molecular Breeding 3, 239− 245 |
17 | Li, Z., Ping, M., Chunping, L., Zhang, H. L., Li, Z. K., et al. (2005) QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments. Theor. Appl. Genet. 110, 1244−1252 |
18 | Park, H. and Mok, S. K. (1975) Nitrogen efficiency and its relation to various physiological characteristics among rice varieties. J. Korean Agric. Chem. Soc. 8, 105−111 |
19 | Harushima, Y., Yano, M., Shomura, A., Sato, M., Shimano, T., et al. (1998) A high-density rice genetic linkage map with 2,275 markers using a single population. Genetics 148, 479−494 |
20 | Song, M. T., Lee, J. H., Cho, Y. S., Jeong, O. Y., and Hwang, H. G. (2001) Construction of linkage map and heading date related QTL analysis using the population between Japonica rices. Korean J. Genetics 23, 401−406 |
21 | Conway, G. R. and Pretty, J. N. (1988) Fertilizer risks in developing countries. Nature 334, 207−208 |
22 | Li, Z. S., Pinson, R. M., Stansel, J. W., and Park, D. (1995) Identification of two major genes and quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.). Theor. Appl. Genet. 91, 371−381 |
23 | Cassman, K. G., Peng, S., Olk, D. C., Ladha, J. K., Reichardt, W., et al. (1998) Opportunities for increased nitrogen use efficiency from improved resource management in irrigated rice systems. Field Crops Res. 56, 7−39 |
24 | Goodroad, L. L. and Jellum, M. D. (1988) Effect of N fertilizer rate and soil pH on N efficiency in corn. Plant Soil 106, 85−89 |
25 | Hittalmani, S., Shashidhar, H. E., Bagali, P. G., Huang, N., Sidhu, J. S., et al. (2002) Molecular mapping of quantitative trait loci for plant growth, yield and yield related traits across three diverse locations in a doubled haploid rice population. Euphytica 125, 207−214 |
26 | Eta-Ndu, J. T. and Openshaw, S. J. (1999) Epistasis for Grain Yield in Two Populations of Maize. Crop Sci. 39, 346− 352 |
27 | Lian, X., Xing, Y., Yan, H., Xu, C., Li, X., et al. (2005) QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid. Theor. Appl. Genet. 112, 85−96 |
28 | Hu, B., Wu, P., Liao, C. Y., Zhang, W. P., and Ni, J. J. (2001) QTLs and epistasis underlying activity of acid phosphatase under phosphorus sufficient and deficient condition in rice (Oryza sativa L.). Plant Soil 230, 99−105 |
29 | Cho, Y. I. (1999) Variations of nitrogen use efficiency in rice varieties. MS thesis, Graduate School, Seoul National University |
30 | Wu, P., Liao, C. Y., Hu, B., Yi, K. K., Jin, W. Z., et al. (2000) QTLs and epistasis for aluminum tolerance in rice (Oryza sativa L.). Theor. Appl. Genet. 100, 1295−1303 |
31 | Hirel, B., Bertin, P., Quillere, I., Bourdoncle, W., Attagnant, C., et al. (2001) Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize. Plant Physiol. 125, 1258–1270 |
32 | Park, H. and Seok, S. (1982) Efficiency of soil and fertilizer nitrogen in relation to rice variety and application time, using N-15 labelled fertilizer. III. Top-dressing with fertilizer in fields. J. Korean Agric. Chem. Soc. 25, 30−34 |
33 | Xiao, J., Li, J., and Tanksley, D. D. (1996) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor. and Appl. Genet. 92, 230−244 |
34 | McCouch, S. R., Cho, Y. G., Yano, M., Paul, E., Blinstrub, M., et al. (1997) Report on QTL nomenclature. Rice Gente. Newslett. 14, 11−13 |
35 | Agrama, H. A. S., Zakaria, A. G., Said, F. B., and Tuinstra, M. (1999) Identification of quantitative trait loci for nitrogen use efficiency in maize. Mol. Breed. 5, 187−195 |
36 | Ishimaru, K., Kobayashi, N., Ono, K., Yano, M., and Ohsugi, R. (2001) Are contents of Rubisco, soluble protein and nitrogen in flag leaves of rice controlled by the same genetics? J. Exp. Bot. 52, 1827−1833 |
37 | Piao, Z., Cho, Y. I., and Koh, H. J. (2001) Inheritance of physiological nitrogen-use efficiency and relationship among its associated charaters in rice. Korean J. Breed. 33, 332−337 |
38 | De Datta, S. K. and Broadbent, F. E. (1990) Nitrogen N-use efficiency of 24 rice genotypes on N-deficient soil. Field Crops Res. 23, 81−92 |
39 | Zhuang, J. Y., Lin, H. X., Lu, J., Qian, H. R., Hittalmani, S., et al. (1997) Analysis of QTL by environment interaction for yield components and plant height in rice. Theor. Appl. Genet. 95, 799−808 |
40 | Loudet, O., Chaillou, S., Merigout, P., Talbotec, J., and Daniel, V. F. (2003) Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiol. 131, 345–358 |
41 | Wan, W. Y., Wan, J. M., Weng, J. F., Jiang, L., Bi, J. C., et al. (2005) Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor. Appl. Genet. 110, 1334−1346 |
42 | Kundu, D. K. and Pillai, K. G. (1992) Integrated nutrient supply system in rice and rice based cropping systems. Fertilizer News 37, 35−41 |
43 | Broadbent, F. E., De Datta S. K., and Laureles, E. V. (1987) Measurement of nitrogen use efficiency in rice genotype. Agron. J. 79, 786−791 |