1 |
Boore, J. L. (1999) Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767−1780
|
2 |
Hwang, U. W., Friedrich, M., Tautz, D., Park, C. J., and Kim, W. (2001) Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 413, 154−157
|
3 |
Lowe, T. M. and Eddy, S. R. (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955−964
DOI
ScienceOn
|
4 |
Nardi, F., Spinsanti, G., Boore, J. L., Carapelli, A., Dallai, R., et al. (2003) Hexapod origins: monophyletic or paraphyletic? Science 299, 1887−1889
DOI
|
5 |
Park, J.-K., Choe, B. L., and Eom, K. S. (2004) Two mitochondrial lineages in Korean freshwater corbicula (Corbiculidae: Bivalvia). Mol. Cells 17, 410−414
|
6 |
Spears, T. and Abele, L. G. (1998) Crustacean phylogeny inferred from 18S rDNA; in Arthropod relationships, Fortey, R. A. and Thomas, R. H. (eds.), pp. 169−187, Chapman & Hall, London
|
7 |
Mallatt, J. M., Garey, J. R., and Shultz, J. W. (2004) Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol. Phylogenet. Evol. 31, 178−191
DOI
ScienceOn
|
8 |
Yamauchi, M. M., Miya, M. U., and Nishida, M. (2002) Complete mitochondrial DNA sequence of Japanese spiny lobster, Panulinus japonicus (Crustacea: Decapoda). Gene 295, 89−96
|
9 |
Giribet, G., Edgecombe, D., and Wheeler, W. C. (2001) Arthropod phylogeny based on eight molecular loci and morphology. Nature 413, 157−161
|
10 |
Guindon, S. and Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696−704
DOI
ScienceOn
|
11 |
Darwin, C. R. (1851) Fossil Cirripedia. A monograph on the fossil Lepadidae, or, pedunculated cirripedes of Great Britain. in Palaeontographical Society. London
|
12 |
Ojala, D., Merkel, C., Gelfand, R., and Attardi, G. (1980) The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA. Cell 22, 393−403
|
13 |
Peterson, K. J. and Eernisse, D. J. (2001) Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences. Evol. Dev. 3, 170−205
|
14 |
Cook, C. E. (2005) The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC genomics 6, 105
DOI
ScienceOn
|
15 |
Huelsenbeck, J. P. and Ronquist, F. (2001) MrBays: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754−755
|
16 |
Hickerson, M. J. and Cummingham, C. W. (2000) Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol. Biol. Evol. 17, 639−644
|
17 |
Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17, 540−552
|
18 |
Abascal, F., Zardoya, R., and Posada, D. (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 12, 12
|
19 |
Darwin, C. R. (1854) Fossil Cirripedia. A monograph of the fossil Balanidae and Verrucidae of Great Britain. Palaeontographical Society. London
|
20 |
Lavrov, D. V., Brown, W. M., and Boore, J. L. (2004) Phylogenetic position of the Pentastomida and (pan)crustacean relationships. Proc. R. Lond. B. 271, 537−544
|
21 |
Machida, R. J., Miya, M. U., and Nishida, S. (2002) Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar. Biotechnol. 4, 406−417
|
22 |
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid. Res. 25, 4876−4882
DOI
ScienceOn
|
23 |
Crozier, R. H. and Crozier, Y. C. (1993) The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics 133, 97−117
|
24 |
Hassanin, A. (2006) Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol. Phylogenet. Evol. 38, 100−116
DOI
ScienceOn
|
25 |
Shao, R., Campbell, N. J. H., and Barker, S. C. (2001) Numerous gene arrangements in mitochondrial genome of the wallaby louse, Heterodoxus marcropus (Phthiraptera). Mol. Biol. Evol. 18, 858−865
|
26 |
Wilson, K., Cahill, V., Ballment, E., and Benzie, J. (2000) The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods- Mol. Miol. Evol. 17, 863−874
|
27 |
Zrzavy, J., Hypsa, V., and Vlaskova, M. (1998) Arthropod phylogeny: taxonomic congruence, total evidence and conditional combination approaches to morphological and molecular data sets; in Arthropod relationships, Fortey, R. A. and Thomas, R. H. (eds.), pp. 97−10, Chapman & Hall, London
|
28 |
Wills, M. A. (1998) A phylogeny of Recent and fossil Crustacea derived from morphological characters; in Arthropod relationships, R. A. Fortey and R. H. Thomas (eds.), pp. 189−209, Chapman & Hall, London
|
29 |
Mau, B., Newton, M. A., and Larget, B. (1999) Bayesian phylogenetic inference via Markov Chain Monte Carlo methods. Biometrics 55, 1−12
DOI
ScienceOn
|
30 |
Boore, J. L., Lavrov, D. V., and Brown, W. M. (1998) Gene translocation links insects and crustaceans. Nature 392, 667−668
|
31 |
Schram, F. R. and Hof, C. H. J. (1998) In Arthropod Fossils and Phylogeny, G. D. Edgecombe, G. D. (ed.), pp. 233−302, Columbia Univ. Press, New York
|