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Molecular Phylogeny and Geography of Korean Medaka Fish (Oryzias latipes)  

Kang, Tae-Wook (National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology)
Lee, Eun-Hye (Department of Biology, Chungnam National University)
Kim, Moo-Sang (Department of Molecular Cellular and Developmental Biology, Yale University)
Paik, Sang-Gi (Department of Biology, Chungnam National University)
Kim, Sang-Soo (Department of Bioinformatics, Soongsil University)
Kim, Chang-Bae (National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology)
Publication Information
Molecules and Cells / v.20, no.1, 2005 , pp. 151-156 More about this Journal
Abstract
The phylogeny and geography of the medaka (Oryzias latipes) populations of Korea were investigated by analyzing sequence data for the mitochondrial control region. From the 41 haplotypes including 25 Korean haplotypes detected in 64 Korean specimens and data for the Japanese and Chinese populations, phylogenetic and nested clade analyses were executed to examine the phylogeny of haplogroups and the relation of the genetic architecture of the haplotypes to the historical geography of the Korean medaka fish. The analyses suggest that there are two very distinct lineages of Korean medaka, and that these result from reproductive isolation mechanisms due to geographic barriers. The southeastern lineage has experienced recent range expansion to the western region. The northwestern lineage, sister to Chinese populations, showed evidence of internal range expansion with shared haplotypes.
Keywords
Korea; Medaka Fish; Mitochondrial D-Loop; Phylogeography;
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Times Cited By Web Of Science : 4  (Related Records In Web of Science)
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1 Brookfield, J. F. (2001) Population genetics: the signature of selection. Curr. Biol. 11, R388-390   DOI   ScienceOn
2 Kondo, M., Nanda, I., Hornung, U., Schmid, M., and Schartl, M. (2004) Evolutionary origin of the medaka Y chromosome. Curr. Biol. 14, 1664-1669   DOI   ScienceOn
3 Maruyama, T. and Birky, Jr. C. W. (1991) Effects of periodic selection on gene diversity in organelle genomes and other systems without recombination. Genetics 127, 449-451
4 Page, R. D. (1996) TreeView: an application to display phylogenetic trees on personal computer. Comput. Appl. Biosci. 12, 357-358
5 Templeton, A. R. (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7, 381-397   DOI   ScienceOn
6 Templeton, A. R., Crandall, K. A., and Sing, C. F. (1992) A cladistic analysis of phenotypic associations and haplotypes inferred from restriction endonuclease mapping and sequence data. III. Cladogram estimation. Genetics 132, 619-633
7 Zardoya, R., Castilho, R., Grande, C., Favre-Krey, L., Caetano, S., et al. (2004) Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus), in the Mediterranean Sea. Mol. Ecol. 13, 1785-1798   DOI   ScienceOn
8 Hall, T. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41, 95-98
9 Crandall, K. and Templeton, A. (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134, 959-969
10 Kim, I. S. and Lee, E. H. (1992) New records of rice fish, Oryzias latipes sinensis (Pisces, Oryzidae) from Korea. Korean J. Syst. Zool. 8, 177-182   과학기술학회마을
11 Ronquist, F. and Huelsenbeck, J. P. (2003) MrBayes: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574   DOI   ScienceOn
12 Salzburger, W., Brandstatter, A., Gilles, A., Parson, W., Hempel, M., et al. (2003) Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe. Mol. Ecol. 12, 2371-2386   DOI   ScienceOn
13 Posada, D., Crandall, K. A., and Templeton, A. R. (2000) Geo- Dis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9, 487-488   DOI   ScienceOn
14 Swofford, D. L. (2000) Phylogenetic Analysis Using Parsimony and Other Methods (Software). Sinauer Associates, Sunderland, MA
15 Takehana, Y., Uchiyama, S., Matsuda, M., Jeon, S. R., and Sakaizumi, M. (2004a) Geographic variation and diversity of the cytochrome b gene in wild populations of medaka (Oryzias latipes) from Korea and China. Zool. Sci. 21, 483- 491   DOI   ScienceOn
16 Golding, G. B. (1987) The detection of deleterious selection using ancestors inferred from a phylogenetic history. Genet. Res. 49, 71-82
17 Sakaizumi, M. and Jeon, S. R. (1987) Two divergent groups in the wild populations of medaka Oryzias latipes (Pisces: Oryzitidae) in Korea. Korean J. Lim. 20, 13-20
18 Kim, I. S. and Moon, K. C. (1987) The karyotype of a ricefish, Oryzias latipes from southern Korea. Korean J. Zool. 30, 379-386   과학기술학회마을
19 Uwa, H. and Jeon, S. R. (1987) Karyotypes in two divergent groups of a ricefish, Oryzias latipes, from Korea. Korean J. Limnol. 20, 139-147
20 Kim, I. S. (1997) Illustrated Encyclopedia of Fauna & Flora of Korea. Vol. 37, p. 629, Freshwater Fishes. Ministry of Education
21 Verheyen, E., Salzburger, W., Snoeks, J., and Meyer, A. (2003) Origin of the superflock of cichlid fishes from Lake Victoria, East Africa. Science 300, 325-329   DOI   ScienceOn
22 Wittbrodt, J., Shima, A., and Schartl, M. (2002) Medaka-a model organism from the Far East. Nat. Rev. Genet. 3, 53-64   DOI   ScienceOn
23 Naruse, K., Hori, H., Shimizu, N., Kohara, Y., and Takeda, H. (2004) Medaka genomics: a bridge between mutant phenotype and gene function. Mech. Dev. 121, 619-628   DOI   ScienceOn
24 Takahashi, H. and Goto, A. (2001) Evolution of East Asian ninespine sticklebacks as shown by mitochondrial DNA control region sequences. Mol. Phylogenet. Evol. 21, 135-155   DOI   ScienceOn
25 Matsuda, M., Yamagishi, T., Sakaizumi, M., and Jeon, S. R. (1997) Mitochondrial DNA variation in the Korean wild population of medaka, Oryzias latipes. Korean J. Limnol. 30, 119-128
26 Templeton, A. R., Routman, E., and Phillips, C. A. (1995) Separating population structure from population history: a cladistic analysis of geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140, 767-782
27 Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882   DOI
28 Kim, I. S. and Kim, S. Y. (1993) Interspecific hybridization between Oryzias sinensis and O. latipes from Korea. Korean J. Ichthyol. 5, 113-121
29 Takehana, Y., Jeon, S.-R., and Sakaizumi, M. (2004b) Genetic structure of Korean wild populations of the medaka Oryzias latipes Inferred from allozymic variation. Zool. Sci. 21, 977- 988   DOI   ScienceOn