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Characterization of Ty3-gypsy-like Elements in Hibiscus syriacus  

Jeung, Ji-Ung (IRRI-Korea Office, NICS, Rural Development Administration)
Cho, Sung Ki (School of Life Sciences and Biotechnology, Korea University)
Lee, Seung Jae (School of Life Sciences and Biotechnology, Korea University)
Shin, Jeong Sheop (School of Life Sciences and Biotechnology, Korea University)
Publication Information
Molecules and Cells / v.19, no.3, 2005 , pp. 318-327 More about this Journal
Abstract
Southern blot analysis revealed a ubiquitous distribution and high copy number of Ty3-gypsy-like elements in the genome of Hibiscus syriacus. Comparative phylogenetic analysis of the large subunit of Rubisco and the integrase region of Ty3-gypsy elements in various plant species indicated that the retrotransposon-like sequences have different evolutionary histories and their own unique polymorphism in the H. syriacus population. Sequence-tagged site-restriction fragment length polymorphisms (STS-RFLP) analysis also indicated great variability in the numbers and sequences of Ty3-gypsy-like elements within H. syriacus varieties. Ty3-gypsy-like elements may still be active within H. syriacus, since Northern analysis of wounded leaves of H. syriacus variety Saehan with a probe for the integrase domain gave strong hybridization signals. The sequence heterogeneity and ubiquity of the Ty3-gypsy-like elements in H. syriacus genomes could provide reliable DNA markers for line identification as well for the analysis of genetic diversity in H. syriacus.
Keywords
Genetic Diversity; gypsy-like Retrotransposon; Hibiscus syriacus; Integrase; Phylogenetic Analysis;
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