Effects of FIS Protein on rnpB Transcription in Escherichia coli |
Choi, Hyun-Sook
(Department of Chemistry and Center for Molecular Design and Synthesis, Korea Advanced Institute of Science and Technology)
Kim, Kwang-sun (Department of Chemistry and Center for Molecular Design and Synthesis, Korea Advanced Institute of Science and Technology) Park, Jeong Won (Department of Chemistry and Center for Molecular Design and Synthesis, Korea Advanced Institute of Science and Technology) Jung, Young Hwan (Department of Chemistry and Center for Molecular Design and Synthesis, Korea Advanced Institute of Science and Technology) Lee, Younghoon (Department of Chemistry and Center for Molecular Design and Synthesis, Korea Advanced Institute of Science and Technology) |
1 | Ball, C. A., Osuna, R., Ferguson, K. C., and Johnson, R. C. (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J. Bacteriol. 174, 8043-8056 |
2 | Dorman, C. J. and Deighan, P. (2003) Regulation of gene expression by histone-like proteins in bacteria. Curr. Opin. Genet. Dev. 13, 179-184 DOI ScienceOn |
3 | Finkel, S. E. and Johnson, R. C. (1992) The Fis protein: it's not just for DNA inversion anymore. Mol. Microbiol. 6, 3257- 3265 DOI ScienceOn |
4 | Hirvonen, C. A., Ross, W., Wozniak, C. E., Marasco, E., Anthony, J. R., et al. (2001) Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J. Bacteriol. 183, 6305- 6314 DOI ScienceOn |
5 | Muskhelishvili, G. and Travers, A. (2003) Transcription factor as a topological homeostat. Front. Biosci. 8, d279-285 DOI |
6 | Pan, C. Q., Finkel, S. E., Cramton, S. E., Feng, J. A., Sigman, D. S., et al. (1996) Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. J. Mol. Biol. 264, 675-695 DOI ScienceOn |
7 | Schneider, R., Travers, A., and Muskhelishvili, G. (1997) FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli. Mol. Microbiol. 26, 519-530 DOI ScienceOn |
8 | Spaeny-Dekking, L., Nilsson, L., von Euler, A., van de Putte, P., and Goosen, N. (1995) Effects of N-terminal deletions of the Escherichia coli protein Fis on growth rate, tRNA(2Ser) expression and cell morphology. Mol. Gen. Genet. 246, 259- 265 DOI |
9 | Yu, D., Ellis, H. M., Lee, E. C., Jenkins, N. A., Copeland, N. G., et al. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. USA 97, 5978-5983 |
10 | Betermier, M., Galas, D. J., and Chandler, M. (1994) Interaction of Fis protein with DNA: bending and specificity of binding. Biochimie 76, 958-967 DOI ScienceOn |
11 | Walker, K. A., Atkins, C. L., and Osuna, R. (1999) Functional determinants of the Escherichia coli fis promoter: roles of -35, -10, and transcription initiation regions in the response to stringent control and growth phase-dependent regulation. J. Bacteriol. 181, 1269-1280 |
12 | Zhi, H., Wang, X., Cabrera, J. E., Johnson, R. C., and Jin, D. J. (2003) Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation. J. Biol. Chem. 278, 47340-47349 DOI ScienceOn |
13 | Lee, S. J., Jung, Y. H., Park, C.-U., and Lee, Y. (1991) Stringent control of Escherichia coli rnpB gene transcription in vivo in multicopy plasmids. Mol. Cells 1, 415-420 |
14 | Schneider, R., Travers, A., Kutateladze, T., and Muskhelishvili, G. (1999) A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol. Microbiol. 34, 953-964 DOI ScienceOn |
15 | Filutowicz, M., Ross, W., Wild, J., and Gourse, R. L. (1992) Involvement of Fis protein in replication of the Escherichia coli chromosome. J. Bacteriol. 174, 398-407 |
16 | Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N., and Altman, S. (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849-857 DOI ScienceOn |
17 | Park, J. W., Jung, Y. H., Park, B. H., Jeoung, Y. H., and Lee, Y. (1996) Direct analysis of the transcription of Escherichia coli rnpB gene harbored in a multicopy plasmid during bacterial growth. J. Biochem. Mol. Biol. 29, 221-224 |
18 | Nilsson, L., Verbeek, H., Vijgenboom, E., van Drunen, C., Vanet, A., et al. (1992) FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions. J. Bacteriol. 174, 921-929 |
19 | Bokal, A. J., Ross, W., Gaal, T., Johnson, R. C., and Gourse, R. L. (1997) Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter. EMBO. J. 16, 154-162 DOI ScienceOn |
20 | Newlands, J. T., Josaitis, C. A., Ross, W., and Gourse, R. L. (1992) Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent. Nucleic Acids Res. 20, 719-726 DOI ScienceOn |
21 | Pemberton, I. K., Muskhelishvili, G., Travers, A. A., and Buckle, M. (2002) FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter. J. Mol. Biol. 318, 651-663 DOI ScienceOn |
22 | Kim, S., Kim, H., Park, I., and Lee, Y. (1996) Mutational analysis of RNA structures and sequences postulated to affect 3′ processing of M1 RNA, the RNA component of Escherichia coli RNase P. J. Biol. Chem. 271, 19330-19337 DOI ScienceOn |
23 | Condon, C., Squires, C., and Squires, C. L. (1995) Control of rRNA transcription in Escherichia coli. Microbiol. Rev. 59, 623-645 |
24 | Jeon, E. S., Lee, H. R., Lee, S. G., Jung, Y. H., Cho, M., et al. (1993) Growth rate-dependent regulation of the rnpB gene expression in Escherichia coli. Korean J. Genet. 15, 11-16 |
25 | Jung, Y. H. and Lee, Y. (1997) Escherichia coli rnpB promoter mutants altered in stringent response. Biochem. Biophys. Res. Commun. 230, 582-586 DOI ScienceOn |
26 | Robertson, H. D., Altman, S., and Smith, J. D. (1972) Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic and precursor. J. Biol. Chem. 247, 5243-5251 |
27 | Muskhelishvili, G., Buckle, M., Heumann, H., Kahmann, R., and Travers, A. A. (1997) FIS activates sequential steps during transcription initiation at a stable RNA promoter. EMBO J. 16, 3655-3665 DOI ScienceOn |
28 | Ross, W., Thompson, J. F., Newlands, J. T., and Gourse, R. L. (1990) E. coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. EMBO J. 9, 3733-3742 |
29 | Cashel, M., Gentry, D. R., Hernandez, J. V., and Vinella, D. (1996) The stringent response in Escherichia coli and Salmonella; in Cellular and Molecular Biology, Neidhardt, F. C. (ed.), Vol. 1, pp. 23-54, Am. Soc. Microbiol., Washington, DC |
30 | Kwon, C., Kwon, K., Chung, I. K., Kim, S. Y., Cho, M. H., et al. (2004) Characterization of single stranded telomeric DNAbinding proteins in cultured soybean (Glycine max) cells. Mol. Cells 17, 503-508 |
31 | Weinstein-Fischer, D., Elgrably-Weiss, M., and Altuvia, S. (2000) Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis. Mol. Microbiol. 35, 1413-1420 DOI ScienceOn |
32 | Gosink, K. K., Gaal, T., Bokal, A. J. 4th., and Gourse, R. L. (1996) A positive control mutant of the transcription activator protein FIS. J. Bacteriol. 178, 5182-5187 |